Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B12f
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 1e-26
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 94 7e-20
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 29 1.7
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3) 29 2.9
SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3) 29 2.9
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 2.9
SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) 27 6.8
SB_50621| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 27 9.0
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 116 bits (279), Expect = 1e-26
Identities = 62/119 (52%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = +2
Query: 155 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 334
K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESG+LE DWD
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884
Query: 335 FLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDP-MHQPETG**XDEMD 508
FLPPK IKDPEAKKPEDW +IPDP +PE DE+D
Sbjct: 885 FLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPDPDAKKPEDW--DDEID 941
Score = 51.6 bits (118), Expect = 4e-07
Identities = 41/129 (31%), Positives = 62/129 (48%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV+QF+VKHEQ+IDCGGGY K + + H Y ++ PD T +V +
Sbjct: 827 LVIQFSVKHEQNIDCGGGYAK------DDEMTH---LYTLIVRPD----NTYEVKI---- 869
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
N ++ KD + T+ E D + ++ + + D+ P+ I D
Sbjct: 870 --DNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPD 927
Query: 362 PEAKKPEDW 388
P+AKKPEDW
Sbjct: 928 PDAKKPEDW 936
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 93.9 bits (223), Expect = 7e-20
Identities = 53/117 (45%), Positives = 68/117 (58%), Gaps = 12/117 (10%)
Frame = +2
Query: 74 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 223
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86
Query: 224 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDW 388
D THL+TL+V+PDNT+EV ID E V G L D PP +I+DP+ K+PEDW
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDW 143
Score = 35.1 bits (77), Expect = 0.034
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 290 DNEKVESGDLEA--DWDFLPPKKIKDPEAKKPEDW 388
+ EK+ D E DWD P KI D AKKPE W
Sbjct: 145 EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGW 179
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 209 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 334
D+ CKDD V D T E L+D+ +V+S L D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 290 DNEKVESGDLEADWDFLPPKKIKDPEAKKPE 382
D++ + GD E + FLPP + E+K PE
Sbjct: 106 DSDNGDKGDSEDEESFLPPSIFDESESKGPE 136
>SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
Length = 310
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 351 KSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQCT 473
K R LKP+ K+ + S KT +L++ SL+ + QC+
Sbjct: 28 KLRGLKPKTHKSEVGSIANARNKTETLKLDRSLSNYDKQCS 68
>SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
Length = 310
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 351 KSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQCT 473
K R LKP+ K+ + S KT +L++ SL+ + QC+
Sbjct: 28 KLRGLKPKTHKSEVGSIANARNKTETLKLDRSLSNYDKQCS 68
>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 296 EKVESGDLEADWD-FLPPKKIKDPEAKKPEDW 388
EKV +G++ ++D LPP++ K PE+ PE +
Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 314 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 216
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Frame = -1
Query: 298 LIVNEDFIGVVRFHNQSVQMCVDIIFAADIFFDEMVLTL--VTEDYVYLLGSRTTNVRAE 125
+ + E F V HN S Q DI+ D+ LTL V L + + +
Sbjct: 50 IFLGETFASYVSVHNDSNQSVKDIVIKTDLQTSSQRLTLSGAANMPVAKLDPQKSYDQVI 109
Query: 124 HNLIWSLSVHVLLLQFAVKDLEVSASTVNVLFMFDSE 14
H+ + L H+L+ + L F F +
Sbjct: 110 HHEVKELGTHILVCAVSYSSLAGEKMYFRKFFKFQDD 146
>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
Length = 975
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 278 HRCCQVSQSECTNVC 234
HRCC+ S S TNVC
Sbjct: 138 HRCCETSPSWKTNVC 152
>SB_50621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 342 RLRKSRTLKPRNQKTGMTSPLFQTPKTRSL 431
R + +T+K QKT ++SP + P T+ L
Sbjct: 88 RYAEQKTVKKEEQKTTISSPCYDFPLTKKL 117
>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 279 KSSLTMRKLNLAT*RQTGTSFRLRKSRTLKPRNQKTGMTSPLFQTP 416
+S T +L +A + G SF LRK + PR+++ + S F+ P
Sbjct: 98 RSKSTDYQLEVAKGGERGKSFNLRKFFSKDPRSREPRVPSTCFRRP 143
>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
Length = 524
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 264 LTTPMKSSLTMRKLNLAT*RQTGT-SFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIG 440
L + +++ T R ++ R G SF+ T+ + + +PLFQTP ++L+
Sbjct: 140 LDSVLETPGTARLMDTGMLRTPGNASFQTPGVNTMYQQQIQRTPETPLFQTPPKQTLQAH 199
Query: 441 TSLNTFQ 461
T TFQ
Sbjct: 200 TGRVTFQ 206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,300
Number of Sequences: 59808
Number of extensions: 379315
Number of successful extensions: 974
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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