BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B12f (511 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 1e-26 SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 94 7e-20 SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 29 1.7 SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3) 29 2.9 SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3) 29 2.9 SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 2.9 SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9 SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) 27 6.8 SB_50621| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8 SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0 SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 27 9.0 >SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1137 Score = 116 bits (279), Expect = 1e-26 Identities = 62/119 (52%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Frame = +2 Query: 155 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 334 K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESG+LE DWD Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884 Query: 335 FLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDP-MHQPETG**XDEMD 508 FLPPK IKDPEAKKPEDW +IPDP +PE DE+D Sbjct: 885 FLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPDPDAKKPEDW--DDEID 941 Score = 51.6 bits (118), Expect = 4e-07 Identities = 41/129 (31%), Positives = 62/129 (48%) Frame = +2 Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181 LV+QF+VKHEQ+IDCGGGY K + + H Y ++ PD T +V + Sbjct: 827 LVIQFSVKHEQNIDCGGGYAK------DDEMTH---LYTLIVRPD----NTYEVKI---- 869 Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361 N ++ KD + T+ E D + ++ + + D+ P+ I D Sbjct: 870 --DNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPD 927 Query: 362 PEAKKPEDW 388 P+AKKPEDW Sbjct: 928 PDAKKPEDW 936 >SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) Length = 1086 Score = 93.9 bits (223), Expect = 7e-20 Identities = 53/117 (45%), Positives = 68/117 (58%), Gaps = 12/117 (10%) Frame = +2 Query: 74 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 223 C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86 Query: 224 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDW 388 D THL+TL+V+PDNT+EV ID E V G L D PP +I+DP+ K+PEDW Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDW 143 Score = 35.1 bits (77), Expect = 0.034 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +2 Query: 290 DNEKVESGDLEA--DWDFLPPKKIKDPEAKKPEDW 388 + EK+ D E DWD P KI D AKKPE W Sbjct: 145 EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGW 179 >SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) Length = 551 Score = 29.5 bits (63), Expect = 1.7 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +2 Query: 209 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 334 D+ CKDD V D T E L+D+ +V+S L D D Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526 >SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 510 Score = 29.1 bits (62), Expect = 2.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 290 DNEKVESGDLEADWDFLPPKKIKDPEAKKPE 382 D++ + GD E + FLPP + E+K PE Sbjct: 106 DSDNGDKGDSEDEESFLPPSIFDESESKGPE 136 >SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3) Length = 310 Score = 28.7 bits (61), Expect = 2.9 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 351 KSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQCT 473 K R LKP+ K+ + S KT +L++ SL+ + QC+ Sbjct: 28 KLRGLKPKTHKSEVGSIANARNKTETLKLDRSLSNYDKQCS 68 >SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3) Length = 310 Score = 28.7 bits (61), Expect = 2.9 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 351 KSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQCT 473 K R LKP+ K+ + S KT +L++ SL+ + QC+ Sbjct: 28 KLRGLKPKTHKSEVGSIANARNKTETLKLDRSLSNYDKQCS 68 >SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 165 Score = 28.7 bits (61), Expect = 2.9 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +2 Query: 296 EKVESGDLEADWD-FLPPKKIKDPEAKKPEDW 388 EKV +G++ ++D LPP++ K PE+ PE + Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79 >SB_5367| Best HMM Match : wnt (HMM E-Value=0) Length = 367 Score = 28.7 bits (61), Expect = 2.9 Identities = 9/33 (27%), Positives = 17/33 (51%) Frame = -3 Query: 314 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 216 +++Q + C+ H CC+V C H+C+ Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367 >SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 573 Score = 28.3 bits (60), Expect = 3.9 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Frame = -1 Query: 298 LIVNEDFIGVVRFHNQSVQMCVDIIFAADIFFDEMVLTL--VTEDYVYLLGSRTTNVRAE 125 + + E F V HN S Q DI+ D+ LTL V L + + + Sbjct: 50 IFLGETFASYVSVHNDSNQSVKDIVIKTDLQTSSQRLTLSGAANMPVAKLDPQKSYDQVI 109 Query: 124 HNLIWSLSVHVLLLQFAVKDLEVSASTVNVLFMFDSE 14 H+ + L H+L+ + L F F + Sbjct: 110 HHEVKELGTHILVCAVSYSSLAGEKMYFRKFFKFQDD 146 >SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) Length = 975 Score = 27.5 bits (58), Expect = 6.8 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -3 Query: 278 HRCCQVSQSECTNVC 234 HRCC+ S S TNVC Sbjct: 138 HRCCETSPSWKTNVC 152 >SB_50621| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 264 Score = 27.5 bits (58), Expect = 6.8 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 342 RLRKSRTLKPRNQKTGMTSPLFQTPKTRSL 431 R + +T+K QKT ++SP + P T+ L Sbjct: 88 RYAEQKTVKKEEQKTTISSPCYDFPLTKKL 117 >SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 240 Score = 27.1 bits (57), Expect = 9.0 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +3 Query: 279 KSSLTMRKLNLAT*RQTGTSFRLRKSRTLKPRNQKTGMTSPLFQTP 416 +S T +L +A + G SF LRK + PR+++ + S F+ P Sbjct: 98 RSKSTDYQLEVAKGGERGKSFNLRKFFSKDPRSREPRVPSTCFRRP 143 >SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) Length = 524 Score = 27.1 bits (57), Expect = 9.0 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +3 Query: 264 LTTPMKSSLTMRKLNLAT*RQTGT-SFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIG 440 L + +++ T R ++ R G SF+ T+ + + +PLFQTP ++L+ Sbjct: 140 LDSVLETPGTARLMDTGMLRTPGNASFQTPGVNTMYQQQIQRTPETPLFQTPPKQTLQAH 199 Query: 441 TSLNTFQ 461 T TFQ Sbjct: 200 TGRVTFQ 206 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,904,300 Number of Sequences: 59808 Number of extensions: 379315 Number of successful extensions: 974 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 969 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1123894172 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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