Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B12f
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 209 1e-54
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 209 1e-54
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 92 2e-19
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 0.85
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 0.85
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 3.4
Z75955-12|CAB00115.2| 485|Caenorhabditis elegans Hypothetical p... 27 6.0
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical p... 27 7.9
U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical pr... 27 7.9
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 209 bits (510), Expect = 1e-54
Identities = 99/170 (58%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPDICGP T++VHVI +Y
Sbjct: 87 LVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNY 145
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
KG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G LE DWD LP KKIKD
Sbjct: 146 KGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKD 205
Query: 362 PEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDP-MHQPETG**XDEMD 508
P+AKKPEDW HIPDP +PE DEMD
Sbjct: 206 PDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDW--DDEMD 253
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 209 bits (510), Expect = 1e-54
Identities = 99/170 (58%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPDICGP T++VHVI +Y
Sbjct: 87 LVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNY 145
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
KG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G LE DWD LP KKIKD
Sbjct: 146 KGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKD 205
Query: 362 PEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDP-MHQPETG**XDEMD 508
P+AKKPEDW HIPDP +PE DEMD
Sbjct: 206 PDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDW--DDEMD 253
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 91.9 bits (218), Expect = 2e-19
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Frame = +2
Query: 5 VVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 178
VVQ+ +K E+ +CGGGYLK+ + + + +T Y IMFGPD CG T KVH+IF
Sbjct: 139 VVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-ATGKVHLIFR 197
Query: 179 YKGKNHLIKKDIRCK----------DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEAD 328
YK + + DD THL+TL+VKP Y V +D + + G++ +D
Sbjct: 198 YKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSD 257
Query: 329 WD--FLPPKKIKDPEAKKPEDW 388
PPK+I D KP DW
Sbjct: 258 VTPALTPPKQIFDETDLKPVDW 279
Score = 35.1 bits (77), Expect = 0.030
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 257 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 388
VKPD+ E + E+ DW+ + I DPEAKKP+DW
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDW 334
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 290 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 388
+N + ES DWD P+ + D A KP DW
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDW 315
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 310
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 310
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 487 SSFRLVHWIWNVFRLVPILRLLVFGVWNSGLVIPVFWF 374
S+ LVH WN +RL +L F N+ LV +FW+
Sbjct: 1045 SNLLLVHGHWNYYRLAQ--TILYFFYKNAMLVFVIFWY 1080
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 233 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 346
+TH +TL VKP N Y+ DN+ ++ E F P
Sbjct: 23 HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61
>Z75955-12|CAB00115.2| 485|Caenorhabditis elegans Hypothetical
protein R07B7.6 protein.
Length = 485
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 304 NFLIVNEDFIGVVRFHNQSVQMCVDIIFAADIF-FDEMVLTLVTEDYVYLLGSRTTNVRA 128
N +IV++ F+ + F ++ + + + D + DEM++ + E+Y+ L G +N
Sbjct: 318 NEVIVSKVFVKSM-FEKLNMDIIIKLFDDNDYYGVDEMLVQTLYENYLGLEGQMESNCTR 376
Query: 127 EHNLIWSLSVH 95
HN I + H
Sbjct: 377 NHNDILTRMTH 387
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 235 VDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIW 110
+D+I A+D+FFD + + + LL ++ EH IW
Sbjct: 111 LDVIIASDVFFDPSTFCPLIDTFAQLL------IKFEHATIW 146
>Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical
protein F55C5.11 protein.
Length = 205
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 282 SSLTMRKLNLAT*RQTGTSFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTF 458
S++ +R+++ T G F R+SR N + P T L + TSL+TF
Sbjct: 127 SAVHLREMHTCTVTGCGKQFSSRRSRNRHSSNNNPKLHMPESLTLTGSGLSMKTSLDTF 185
>U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical
protein T19H12.6 protein.
Length = 619
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 50 GGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 154
GGY+ D + + DM EI +CGPG+
Sbjct: 415 GGYMTASDLEDYESDMSSAICSEIDVDTKVCGPGS 449
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,619
Number of Sequences: 27780
Number of extensions: 279732
Number of successful extensions: 911
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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