Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B12f
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 192 9e-50
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 188 2e-48
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 175 1e-44
At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin... 103 7e-23
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi... 99 2e-21
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 60 9e-10
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont... 31 0.45
At3g31540.1 68416.m04025 hypothetical protein 31 0.60
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 30 0.79
At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like fami... 29 2.4
At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5)... 29 2.4
At3g14670.1 68416.m01856 hypothetical protein 28 4.2
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family... 27 5.5
At3g27740.1 68416.m03463 carbamoyl-phosphate synthase [glutamine... 27 5.5
At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein conta... 27 5.5
At2g42290.1 68415.m05235 leucine-rich repeat family protein cont... 27 7.3
At2g31040.1 68415.m03786 ATP synthase protein I -related contain... 27 7.3
At1g74670.1 68414.m08647 gibberellin-responsive protein, putativ... 27 7.3
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 27 9.7
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 192 bits (469), Expect = 9e-50
Identities = 81/129 (62%), Positives = 99/129 (76%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDICG TKKVH I +Y
Sbjct: 94 LVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTY 153
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
NHLIKKD+ C+ D TH+YT I++PD TY +LIDN + ++G L +DWD LPPKKIKD
Sbjct: 154 NEANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKKIKD 213
Query: 362 PEAKKPEDW 388
P AKKPEDW
Sbjct: 214 PSAKKPEDW 222
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 188 bits (458), Expect = 2e-48
Identities = 78/129 (60%), Positives = 98/129 (75%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV QF+VKHEQ +DCGGGY+K+ ++Q G+TPY IMFGPDICG TKKVH I +Y
Sbjct: 94 LVFQFSVKHEQKLDCGGGYMKLLSDDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTY 153
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
G NHLIKK++ C+ D TH+YT +++PD TY +LIDN + ++G L +DWD LP KKIKD
Sbjct: 154 NGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKD 213
Query: 362 PEAKKPEDW 388
P AKKPEDW
Sbjct: 214 PSAKKPEDW 222
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 175 bits (427), Expect = 1e-44
Identities = 74/129 (57%), Positives = 97/129 (75%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LVVQ++VK EQDI+CGG Y+K+ + QK G+TPY +MFGPDICG TKK+HVI SY
Sbjct: 100 LVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSY 159
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
+G+N+ IKKD++C+ D H YT I++PD +Y VL+DN++ E G + DWD LPP+KIK
Sbjct: 160 QGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPPRKIKV 219
Query: 362 PEAKKPEDW 388
AKKPEDW
Sbjct: 220 KNAKKPEDW 228
>At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin
homolog 1, Arabidopsis thaliana, EMBL:AT08315
[SP|P29402]
Length = 530
Score = 103 bits (247), Expect = 7e-23
Identities = 56/142 (39%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVI 172
+V+Q+ V+ ++ ++CGG YLK + + E+PY IMFGPD CG GT KVH I
Sbjct: 94 VVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCG-GTNKVHFI 152
Query: 173 FSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 334
+K H +K D +H+YT I+KPDN +L+D E+ + +L + D
Sbjct: 153 LKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLSGED 212
Query: 335 F----LPPKKIKDPEAKKPEDW 388
F +P K I DPE KKPEDW
Sbjct: 213 FEPALIPAKTIPDPEDKKPEDW 234
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 257 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 388
VKP++ E + E + W P+++ DPEA KPEDW
Sbjct: 246 VKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDW 289
>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
similarity to calnexin homolog 1, Arabidopsis thaliana,
EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
calreticulin family
Length = 532
Score = 98.7 bits (235), Expect = 2e-21
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVI 172
+V+Q+ + ++ ++CGG YLK + + ++PY IMFGPD CG T KVH I
Sbjct: 96 VVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQGFDNDSPYSIMFGPDKCG-ATNKVHFI 154
Query: 173 FSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 334
+K H +K D+ +H+YT ++K DN +L+D E+ + G+L + D
Sbjct: 155 LKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAED 214
Query: 335 FLPP----KKIKDPEAKKPEDW 388
F PP K I DPE KKPEDW
Sbjct: 215 FEPPLIPSKTIPDPEDKKPEDW 236
Score = 34.3 bits (75), Expect = 0.048
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 257 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 388
VKPD+ E + E + W P +++DPEA KPEDW
Sbjct: 248 VKPDDWDEDAPMEIEDEEAEKPEGWLDDEPVEVEDPEASKPEDW 291
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 60.1 bits (139), Expect = 9e-10
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +2
Query: 266 DNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 388
D Y VL+DN++ E G + DWD LPP+KIK AKKPEDW
Sbjct: 134 DTPYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDW 174
Score = 53.2 bits (122), Expect = 1e-07
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LVVQ++VK EQDI+CGG Y+K+ + QK G+TPY ++ K+ Y
Sbjct: 100 LVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSVLV-------DNKEREFGSMY 152
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES-GDLEADWDFLPPKKIK 358
+ L + I+ K+ KP++ D E ++ D++ + P++I
Sbjct: 153 TDWDILPPRKIKVKN---------AKKPED----WDDREYIDDPNDVKPEGFDSIPREIP 199
Query: 359 DPEAKKPEDW 388
D +AK+PEDW
Sbjct: 200 DRKAKEPEDW 209
>At1g74170.1 68414.m08590 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1068
Score = 31.1 bits (67), Expect = 0.45
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 8 VQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEI 121
++F KH D GG +F L + ++ GE P E+
Sbjct: 830 IEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEL 867
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 30.7 bits (66), Expect = 0.60
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 188 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPP 346
KN I + CKDD YT + + D E L+ + G L+ FL P
Sbjct: 252 KNMKIIEGFPCKDDAYTDYFFFVALEDAVLEDLVGKVLTKWGILDRPIRFLEP 304
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 8 VQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYE 118
++F KH D GG +F L + ++ GE P E
Sbjct: 762 IEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVE 798
>At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 789
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 188 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEAD 328
KN KK+ +D TH IV D VL+D E+++S DL +D
Sbjct: 53 KNVARKKEAEIEDLCKTHYEEFIVAVDELRGVLVDAEELKS-DLASD 98
>At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5) /
gibberellin-responsive protein 5 identical to GASA5
[Arabidopsis thaliana] GI:1289320
Length = 97
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = -2
Query: 102 PCMSFCSSLQSKTLRYPP---PQSMSCSCLTVNWTTK 1
PCM FC K L PP +C C NW TK
Sbjct: 55 PCMFFCLKCCKKCLCVPPGTFGNKQTCPCYN-NWKTK 90
>At3g14670.1 68416.m01856 hypothetical protein
Length = 232
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 299 KVESGDLEADWDFLPPKKIKDPEAKKPED 385
K + GDLE D D K KDP+ K P++
Sbjct: 169 KEKDGDLEKDGDQEKDPKEKDPKEKDPKE 197
>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
protein
Length = 466
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 DMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKK-DIRCKDDVYTHLYTL 253
D+ + + P+I G G K V +++ + K +KK ++ KD T LY L
Sbjct: 152 DIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYIL 206
>At3g27740.1 68416.m03463 carbamoyl-phosphate synthase
[glutamine-hydrolyzing] (CARA) / glutamine-dependent
carbamoyl-phosphate synthase small subunit identical to
carbamoyl phosphate synthetase small subunit GI:2462781
[Arabidopsis thaliana]
Length = 430
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +2
Query: 191 NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD----LEADWDFLPPKKIK 358
++L ++DI D+ T T ++ D + ++ E+ ++ D + WD + I
Sbjct: 153 DYLTERDIMGVYDLDTRAITRRLREDGSLIGVLSTEQSKTDDELLQMSRSWDIVGIDLIS 212
Query: 359 DPEAKKPEDW 388
D K P +W
Sbjct: 213 DVSCKSPYEW 222
>At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein contains
Pfam profile PF01151: GNS1/SUR4 family
Length = 281
Score = 27.5 bits (58), Expect = 5.5
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 1/117 (0%)
Frame = -1
Query: 493 SSSSFRLVHWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFLGFRVLDFLRRKEVPVCL*V 314
+++ R W+W R + L F V FW F + FL +
Sbjct: 91 AAAEIRDTRWLWRRTRTTALQWFLCFPVGTRASGRVFFWSYAFYLSRFLH---------L 141
Query: 313 ARFNFLIVNEDFIGVVRFHNQSVQMCVDIIFAA-DIFFDEMVLTLVTEDYVYLLGSR 146
R F ++ + + NQS +C+ ++ F + + L T Y + G R
Sbjct: 142 FRTFFSVIRRRKLSFFQLINQSSLLCISFLWLEYSQSFQVVAILLTTVSYAVVYGYR 198
>At2g42290.1 68415.m05235 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 646
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -2
Query: 138 MSGPNIISYGVSP---CMSFCSSLQSKTL 61
M P+I+S VS CMSFCSSL S L
Sbjct: 1 MKLPSILSLVVSSIFLCMSFCSSLNSDGL 29
>At2g31040.1 68415.m03786 ATP synthase protein I -related contains
weaks similarity to Swiss-Prot:P08443 ATP synthase
protein I [Synechococcus sp.]
Length = 350
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = -1
Query: 445 LVPILRLLVFGVWNSGLVIPVFWFLGFRVLDFL 347
LVP++ +++F WN+ +++P + F+ ++ L
Sbjct: 282 LVPVVLVMIFNRWNA-ILVPEYGFMHLELIPML 313
>At1g74670.1 68414.m08647 gibberellin-responsive protein, putative
similar to SP|P46690 Gibberellin-regulated protein 4
precursor {Arabidopsis thaliana} GASA4; contains Pfam
profile PF02704: Gibberellin regulated protein
Length = 101
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = -2
Query: 102 PCMSFCSSLQSKTLRYPP---PQSMSCSCLTVNWTTK 1
PCM FC +K L PP C C NW T+
Sbjct: 59 PCMFFCQKCCAKCLCVPPGTYGNKQVCPCYN-NWKTQ 94
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +2
Query: 263 PDNTYEVLIDN------EKVESGDLEADWDFLPPKKIKDP 364
PDN + L+D E +E+GD E DWD K + P
Sbjct: 16 PDNFLDNLVDPTNDVSVEDIETGDDEGDWDAKFQKLVPPP 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,214
Number of Sequences: 28952
Number of extensions: 260204
Number of successful extensions: 671
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -