Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    30   0.18 
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    28   0.97 
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    28   0.97 
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.2  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   3.0  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   3.9  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   5.2  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   5.2  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   6.8  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   9.0  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 96  SGRSHSFHTHHYVSNHSDHFHHIHRGS 176
           +G  H  H HHY++ H    +H H GS
Sbjct: 739 NGGHHHHHHHHYITGHVYGGYHKHSGS 765


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 57  IHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRT 236
           IH      S SP S  S + H + Y+S+    F      S+ + SH P +   +    R 
Sbjct: 93  IHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASK-IQSHEPLNDMAAVHPLRP 151

Query: 237 IRISSARS-PEPRLARV 284
             +S   S PEP+ A V
Sbjct: 152 SHVSGPLSPPEPKAASV 168


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +3

Query: 42  PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNH---SDHFHHIHRGSRYLISHR-PDSP 209
           P+ ++ HQ  D  + S      H  +    +S     S H HH    S Y +S   P SP
Sbjct: 81  PAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSP 140

Query: 210 TNSSP 224
           T+S P
Sbjct: 141 TSSGP 145


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 42  PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHH 161
           P+ +      + FS   P G S+   + H+++N+    HH
Sbjct: 371 PTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANYGGSVHH 410


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   LIHQLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTH-HYVSNH 143
           ++  LY  +GESV SRI++   +D   D   +  S ++++H   V+ H
Sbjct: 336 ILDALYVFSGESVNSRIQVVSDVDDDEDD-ENAFSQNYYSHLQMVAKH 382


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 355 IARVLVHIGHVRIRGINGSNLVTETRASRGSGERAELIRIV 233
           ++++   +G V I G+N SN+      S  +G+R + I +V
Sbjct: 159 VSKMHCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 86  FTPIRTKSFFPYTPLRF 136
           F  ++T+ + PYTP+RF
Sbjct: 169 FVNLQTRCYLPYTPVRF 185


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 122 TPLRFEPFRPFPSYPQRFPIFNFPSPGFTDEQFPAMQNYPNQ 247
           +P+ +    P PS+P   PI+N  S G+  +  P M  Y NQ
Sbjct: 451 SPMYYNYNYPQPSFPPFHPIYN-DSIGYYSQANPQMY-YANQ 490


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 75  HFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGS 176
           H   S  S   H+    H+  +H  H HH H  S
Sbjct: 7   HKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHDSS 40


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 56  DSSGNRPFFRFTPIRTKSFFPYTPLRFEPFRPFP 157
           D+S   PF    P  ++S FP T   + P+  FP
Sbjct: 178 DNSALEPFLNRYPA-SESLFPVTEYEYTPWLEFP 210


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 79  FQIHPHQDEVILSIHTTTFRTIQTISIISTEVPDI*FPIARIHRRTVPRDAELS 240
           +QI   + E+ L I+TTTF+TI     +   + D    ++   R  + +D++L+
Sbjct: 535 YQILLPESELDLKINTTTFKTIANNKSVDAFLDDC---VSFFSRPEMTQDSQLN 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,032
Number of Sequences: 5004
Number of extensions: 41743
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)