BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B11f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 30 0.18 SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 28 0.97 SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 28 0.97 SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.7 SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 2.2 SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 3.0 SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 26 3.9 SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 5.2 SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 5.2 SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 25 6.8 SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 9.0 >SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 794 Score = 30.3 bits (65), Expect = 0.18 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 96 SGRSHSFHTHHYVSNHSDHFHHIHRGS 176 +G H H HHY++ H +H H GS Sbjct: 739 NGGHHHHHHHHYITGHVYGGYHKHSGS 765 >SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 819 Score = 27.9 bits (59), Expect = 0.97 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Frame = +3 Query: 57 IHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRT 236 IH S SP S S + H + Y+S+ F S+ + SH P + + R Sbjct: 93 IHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASK-IQSHEPLNDMAAVHPLRP 151 Query: 237 IRISSARS-PEPRLARV 284 +S S PEP+ A V Sbjct: 152 SHVSGPLSPPEPKAASV 168 >SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 515 Score = 27.9 bits (59), Expect = 0.97 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Frame = +3 Query: 42 PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNH---SDHFHHIHRGSRYLISHR-PDSP 209 P+ ++ HQ D + S H + +S S H HH S Y +S P SP Sbjct: 81 PAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSP 140 Query: 210 TNSSP 224 T+S P Sbjct: 141 TSSGP 145 >SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 27.1 bits (57), Expect = 1.7 Identities = 10/40 (25%), Positives = 19/40 (47%) Frame = +3 Query: 42 PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHH 161 P+ + + FS P G S+ + H+++N+ HH Sbjct: 371 PTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANYGGSVHH 410 >SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1029 Score = 26.6 bits (56), Expect = 2.2 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +3 Query: 3 LIHQLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTH-HYVSNH 143 ++ LY +GESV SRI++ +D D + S ++++H V+ H Sbjct: 336 ILDALYVFSGESVNSRIQVVSDVDDDEDD-ENAFSQNYYSHLQMVAKH 382 >SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 518 Score = 26.2 bits (55), Expect = 3.0 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = -2 Query: 355 IARVLVHIGHVRIRGINGSNLVTETRASRGSGERAELIRIV 233 ++++ +G V I G+N SN+ S +G+R + I +V Sbjct: 159 VSKMHCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199 >SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccharomyces pombe|chr 3|||Manual Length = 466 Score = 25.8 bits (54), Expect = 3.9 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +2 Query: 86 FTPIRTKSFFPYTPLRF 136 F ++T+ + PYTP+RF Sbjct: 169 FVNLQTRCYLPYTPVRF 185 >SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 122 TPLRFEPFRPFPSYPQRFPIFNFPSPGFTDEQFPAMQNYPNQ 247 +P+ + P PS+P PI+N S G+ + P M Y NQ Sbjct: 451 SPMYYNYNYPQPSFPPFHPIYN-DSIGYYSQANPQMY-YANQ 490 >SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces pombe|chr 3|||Manual Length = 286 Score = 25.4 bits (53), Expect = 5.2 Identities = 11/34 (32%), Positives = 14/34 (41%) Frame = +3 Query: 75 HFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGS 176 H S S H+ H+ +H H HH H S Sbjct: 7 HKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHDSS 40 >SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 351 Score = 25.0 bits (52), Expect = 6.8 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +2 Query: 56 DSSGNRPFFRFTPIRTKSFFPYTPLRFEPFRPFP 157 D+S PF P ++S FP T + P+ FP Sbjct: 178 DNSALEPFLNRYPA-SESLFPVTEYEYTPWLEFP 210 >SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 677 Score = 24.6 bits (51), Expect = 9.0 Identities = 15/54 (27%), Positives = 29/54 (53%) Frame = +1 Query: 79 FQIHPHQDEVILSIHTTTFRTIQTISIISTEVPDI*FPIARIHRRTVPRDAELS 240 +QI + E+ L I+TTTF+TI + + D ++ R + +D++L+ Sbjct: 535 YQILLPESELDLKINTTTFKTIANNKSVDAFLDDC---VSFFSRPEMTQDSQLN 585 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,023,032 Number of Sequences: 5004 Number of extensions: 41743 Number of successful extensions: 145 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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