Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.73
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 2.2
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 26 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.0
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 26 3.9
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 5.2
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 25 5.2
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 6.8
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 25 6.8
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 9.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.0
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 0.73
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -2
Query: 346 TGDAGAASSVESTRGLAV*SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVFT 167
T + +SSV ++ S + T + + S+LN + P+ STV T P T Y V
Sbjct: 536 TSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSVLN 595
Query: 166 LNPPGTTSS 140
+ P T+S+
Sbjct: 596 SSTPITSST 604
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -2
Query: 328 ASSVESTRGLAV*SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVFTLNPPGT 149
+SSV ++ S + T + + YS+LN + P+ STV + P T V + P T
Sbjct: 566 SSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPIT 625
Query: 148 TSS 140
+S+
Sbjct: 626 SST 628
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = -2
Query: 376 VLDAEALHAGTGDAGAASSVESTRGLAV*SALKATFSSLPLYSLLNVAMPLGFSTV*VTV 197
+ + AL+ T ++S + S+ + +AL T + + S+LN + P+ STV +
Sbjct: 1584 ITSSTALNTST-PITSSSVLNSSTPITSSTALN-TSTPITSSSVLNSSTPITSSTVLNSS 1641
Query: 196 LPSTMYMVFTLNPPGTTSS 140
P T +PP T+S+
Sbjct: 1642 TPITSSTALNTSPPITSST 1660
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 2.2
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = -2
Query: 277 ATFSSLPLYSLLNVAMPLGFSTV*VTVLP---STMYMVFTLNPPGTTSSKGT---PDSKK 116
ATF S PLY++ NV P+ +T P +T F + P T+S + S +
Sbjct: 108 ATFVSTPLYTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTE 167
Query: 115 KTDSFGPSVLTVMDLYLLPSLVNTA 41
S+ S V Y S V T+
Sbjct: 168 VASSYSASSTEVTSSYPASSEVATS 192
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 195 NTVTQTVENPNGIATFKREYSGNELKVAFKADHTASPLVDSTE 323
NTV T + + I EY N +AF+ D T L+D E
Sbjct: 192 NTVPLTHIDLDEIRAVCSEYRVNSADIAFRCDATIDDLIDVLE 234
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 229 PLGFSTV*VT--VLPSTMYMVFTLNPPGTTSSKGTPDS 122
P G ST VT V P++ T PP +TSS GT S
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSS 330
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 229 PLGFSTV*VT--VLPSTMYMVFTLNPPGTTSSKGTPDS 122
P G ST VT V P++ T PP +TSS GT S
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSS 384
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 448 WSPFQQRDHPRPPSRRPK 501
WSPF D SRRPK
Sbjct: 391 WSPFHDGDDDESTSRRPK 408
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 51 TKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQTVEN 221
T+ G+ S +VN PK + DE+ PG +KVK ++I + + + + +
Sbjct: 173 TEVGSSQSSPSVNESEPKATE-------DLDELSPGSYKVKEIHIRSPSNLIEAISD 222
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 254 QWQRTKSCLQGRSHCEPSRGLHRARCSCVAC 346
+W + + +Q PSRG+H A +C C
Sbjct: 55 KWIVSSTLVQKLPEDHPSRGVHAAHAACWNC 85
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 192 HRLCTWFLP*IHLGRLRRKAHRTQKKKLTPL 100
H++ W LP H+ + ++K H K + P+
Sbjct: 514 HQVFIWDLPPQHMHKTKKKKHEHFKASVRPI 544
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 271 FSSLPLYSLLNVA-MPLGFSTV*VTVLPSTMYMVFTLNPP 155
F S+P+ S L+ MP+GF+ + +L + V++ N P
Sbjct: 69 FISIPIISHLSPGFMPVGFTALAAILLAMQIMFVYSPNAP 108
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 202 TVLPSTMYMVFTLNPPGTTSSKGTPDSKKKTDSFGPSVLTVMDLYLLP-SLVNT 44
T++PS ++ P ++ P+S + S T+ DL L P L NT
Sbjct: 563 TIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKSFTMNDLILPPLHLKNT 616
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +3
Query: 3 EDQIQKHSQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMY 182
+ +I+ Q K +++L ++YK + ++ ES + VV G K Y
Sbjct: 895 DKKIKNKIQVKLSSILEMLRSRYKKFKKPIIDLND-IYIDESN---ERVVKGKSKDNFEY 950
Query: 183 IVDGNTVTQTVEN 221
+ GNTVT+ +N
Sbjct: 951 FLSGNTVTRKKDN 963
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,194
Number of Sequences: 5004
Number of extensions: 41836
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -