Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 31 0.56
08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018 29 1.7
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 29 2.3
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 28 4.0
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 28 4.0
10_08_0922 - 21593030-21593225,21593319-21594142 28 5.2
09_04_0367 - 16978069-16978085,16978514-16978611,16979069-169792... 28 5.2
06_03_0898 + 25772496-25773501,25774540-25775150 28 5.2
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684 27 6.9
02_05_0117 - 25986555-25987148 27 6.9
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 27 6.9
09_04_0565 + 18580292-18580571,18582823-18583052 27 9.1
08_02_0030 + 11380149-11380721,11380800-11381073,11381281-11382449 27 9.1
08_01_0986 - 9978264-9978593 27 9.1
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 27 9.1
01_01_0173 - 1489798-1489851,1490024-1491535,1491751-1492146 27 9.1
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 373 APQPPSCLPFPRRLYWRVKLLRRP-PWSPFQQRDHPRPPSRRP 498
+P PPS LP P YW + P P P P PP ++P
Sbjct: 266 SPPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPPQQP 308
>08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018
Length = 418
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRESQWHSNIQKGIQWQRTKSCLQGRSHCEPSRG 313
R R ++ QG H H ++ + DC +W + GI Q +C G S+ +G
Sbjct: 223 RYRGQYRQGLRHGHGVYRFYSGDCYAGEWAAGQSHGIGAQ---TCSDGSSYAGEFKG 276
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = +3
Query: 57 EGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQTVENPNGIA 236
E K++++ KE + FF F +V GG + N + +G+A
Sbjct: 473 ESAKFQAVQTRLYEGKEPIQFFVIFQSF-QVFKGGLSSGYKKFIAENGIDDDTYLEDGLA 531
Query: 237 TFKREYSGNELKVAFKADHTASPLVDS 317
F+ + SG E A + D AS L S
Sbjct: 532 LFRIQGSGPENMQAIQVDAAASSLNSS 558
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +2
Query: 149 RPRWIQGKNHVHSRWQHRNSDCRESQWHSNIQKG 250
R W H H + + N D + +W S +Q G
Sbjct: 143 RGSWSMNLKHGHGKKSYANGDHYDGEWRSGLQDG 176
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +2
Query: 191 WQHRNSDCRESQWHSNIQKGIQW--QRTKSCLQGRSHCEPSRGLHRARCSCVACTC 352
W+ + CR + + W TKSC + E + G + RC C C C
Sbjct: 338 WERWEAKCRGESMN------VDWILANTKSCPKCSKPIEKNGGCNHVRCKCGQCLC 387
>10_08_0922 - 21593030-21593225,21593319-21594142
Length = 339
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 445 PWSPFQQRDHPRPPSRRP 498
PW P QQ++ P PP +P
Sbjct: 221 PWFPVQQQEQPPPPPPQP 238
>09_04_0367 -
16978069-16978085,16978514-16978611,16979069-16979229,
16979320-16979548,16979731-16980593
Length = 455
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRESQWHSNIQKGIQWQRTKSCLQGRSH 295
R R ++ QG H H ++ + DC +W GI Q +C G S+
Sbjct: 223 RYRGQYRQGLRHGHGVYRFYSGDCYAGEWAGGQSHGIGAQ---TCSDGSSY 270
>06_03_0898 + 25772496-25773501,25774540-25775150
Length = 538
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 160 PPGTTSSKGTPDSKKKTDSFGPSVLTVMDLYLLPSL 53
PPG T PD + FG SV DLYL P+L
Sbjct: 501 PPGVT-----PDGLDMEEEFGMSVSRKRDLYLRPTL 531
>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
Length = 222
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 382 PPSCLPFPRRLYWRVKLLRRPPWSP 456
PPSC P RL++ ++ ++ PP P
Sbjct: 42 PPSCASQPHRLFFFLRTVQPPPSPP 66
>02_05_0117 - 25986555-25987148
Length = 197
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 282 KADHTASPLVDSTELAAPASPVPA 353
+A+HTASP V++T AA A+ + A
Sbjct: 4 RANHTASPSVNATTAAAAAAMITA 27
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 254 QWQRTKSCLQGRSHCEPSRGLHRARCSCVACTCVQSFCIEHRSLRRAC 397
+W R QG S PS+G R C + +S E R RRAC
Sbjct: 507 RWLRKIDLSQGSSQIHPSQGRSTCRVECWIHS--ESAGKERRKRRRAC 552
>09_04_0565 + 18580292-18580571,18582823-18583052
Length = 169
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 448 WSPFQQRDHPRPPSRRPKHL 507
WS Q+RD PP RR +H+
Sbjct: 141 WSCCQERDEGAPPCRRGRHV 160
>08_02_0030 + 11380149-11380721,11380800-11381073,11381281-11382449
Length = 671
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 400 FPRRLYWRVKLLRRPPWSPFQQRDHPRP-PSRRPKHL 507
FPR YW+ + P +Q +P PS +PK +
Sbjct: 614 FPRNRYWKTPVKSSTPAKKLEQLAQRKPSPSPKPKRV 650
>08_01_0986 - 9978264-9978593
Length = 109
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 221 SQWHSNIQKGIQWQRTKSCLQGRSHCEPSRGLHRARCSCV 340
S WH N Q G + S G P G+HR +CSC+
Sbjct: 53 SWWHRNTQAGSRLLVGGSV--GDDGLIPVGGVHRRQCSCM 90
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 149 RPRWIQGKNHVHSRWQHRNSDCRESQWHSNIQKG 250
R W + H + N D E QW N+Q G
Sbjct: 111 RGAWAADRRHGVGAKSYANGDYYEGQWRRNLQDG 144
>01_01_0173 - 1489798-1489851,1490024-1491535,1491751-1492146
Length = 653
Score = 27.1 bits (57), Expect = 9.1
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = +3
Query: 99 PKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQTVENPNGIATFKREYSGNELKVA 278
P+ S E GVPF +V +KT YIV +T +PN T +G L
Sbjct: 458 PENSTVVPEIGVPFAKVTALPPTMKTRYIVLYENMTS--NDPNTAKTMNLYINGLRL--- 512
Query: 279 FKADHTASPLVDSTEL 326
+ T +P+ +TEL
Sbjct: 513 -EDPPTETPISGTTEL 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,638,515
Number of Sequences: 37544
Number of extensions: 334424
Number of successful extensions: 1131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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