SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)                  31   0.44 
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    31   0.76 
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)                 30   1.3  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       29   2.3  
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   5.4  
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              28   5.4  
SB_39019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025)                 27   7.1  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         27   7.1  
SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)                27   7.1  
SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)                 27   9.4  

>SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)
          Length = 433

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 215 YSLSYGVAIDYVHGFYLESTWDDFVERHTGLKKK 114
           YS+ YG    + H F  ESTW+D + R +G +++
Sbjct: 26  YSIQYGRQGSHDHIFLAESTWNDLLARISGKERE 59


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -2

Query: 262 LPLYSLLNVAMPLGFSTV*--VTVLPSTMYMVF-TLNPPGTTSSKGTPDSKKKTDSFGPS 92
           +P Y++L   +   F+T+     +L + ++  F TL PP   SS   P       S  PS
Sbjct: 71  VPFYNILRAPLFTTFATLRPLYNILRAPLFTTFATLRPPLQHSS--CPSIYYLRYSTPPS 128

Query: 91  VLTVMDLYLLPSLV 50
            +  + LYLLPSL+
Sbjct: 129 TIFFVSLYLLPSLL 142


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 323 ARCSCVACTCVQ-SFCIEHRSLRRA-CRSRVAYT 418
           A CSC+ CTC +    +EH ++R A CRS V  T
Sbjct: 182 ACCSCLVCTCRRYRRVLEHSTVRPASCRSSVRIT 215


>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 433 LRRPPWSP--FQQRDHPRPPSRRPKHLL 510
           L+  P SP  F Q  HPRPP  RPK L+
Sbjct: 103 LKAGPISPYAFPQTVHPRPPPHRPKALM 130


>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
          Length = 600

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRESQWH 232
           RS   W  GK+ +HS+W+HR    +  Q H
Sbjct: 88  RSSNPW--GKSSLHSKWEHRKGSLKRHQRH 115


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +3

Query: 24  SQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTV 203
           S+ KP  V  +EG +YK     T  PK  + +++ G P    +    +VK  +  DG T 
Sbjct: 189 SELKPDKV--QEGEQYKFTCAVTGKPKPVISWYKDGQP----IKADRRVKDSF--DGTTS 240

Query: 204 TQTVEN--PNGIATFKREYSGNELKVAFKADHTASP 305
           T  +++   +   T+K E + +   ++  AD   +P
Sbjct: 241 TLLIKDVKQDDKGTYKVEITNDLGSISSTADLEVTP 276


>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = +2

Query: 203 NSDCRESQWHSNIQKGIQWQRTKSCLQGRSHCEPSRG----LHRARCSCVACTCVQSFCI 370
           N+ C++   H+   K  Q      C +  SH  P +      H AR SC      +S C 
Sbjct: 89  NTPCKDKLLHNTPCKE-QLSHNTPCKEQLSHNTPCKSSCQTTHHARSSCHTTHSARSSCH 147

Query: 371 EHRSLRRACRS 403
              S R +C +
Sbjct: 148 TKHSTRSSCHT 158


>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1147

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 311 HERARSVIGLEGNF*FVATVFPFECCYAIGILYSLSYGVAIDYV 180
           H R RSV+G+ G+F    ++ PF C Y   +     YG  + +V
Sbjct: 681 HLRFRSVVGIYGSFRSWVSMVPFGCGYLWFLSVVGIYGSFLSWV 724


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +2

Query: 293  HCEPSRGLHRARCSCVACTCVQSFCIEHRSLRRACRSRVAYTGE*NCCVVRRGHRSSSAI 472
            +C+P  G    +C    C CV +F  E         SRV  TG  NC V  +G  S +A 
Sbjct: 3229 NCDPQGGYESVQCHSSTCWCVDAFGQE------IANSRV--TGRPNCAV--KG-GSLTAC 3277

Query: 473  IRGLRRAVQNT 505
             R  + A+Q+T
Sbjct: 3278 QRQRQAALQDT 3288


>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -2

Query: 289 SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVF 170
           SA+ ++F++  LY+   VA+ +  +TV VT  P T+Y +F
Sbjct: 322 SAILSSFATF-LYTATTVAVFISLTTVAVTGEPLTLYNIF 360


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 272 SCLQGRSHCEPSRGLHRARCSCVACTCVQSFC 367
           SC+ G      + GLH  +CS   C  V +FC
Sbjct: 684 SCVDGSDESGCTCGLHEFQCSSGECIEVATFC 715


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 281 QGRSHCEPSRGLHRARCSCVACTCVQSFCIEHRSLRR 391
           Q + HC P   L  + C+   C CVQ     H  + R
Sbjct: 194 QDKWHCCPMGSLCSSSCNFARCKCVQFVLTAHGQMTR 230


>SB_39019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 39  TAVLTKEG-NKYKSITVNTDGPKESVFFFESGVP 137
           T VL  EG NK+K ++ +  G +++VF F    P
Sbjct: 82  TCVLRTEGINKHKKMSTSIKGARQNVFLFNECFP 115


>SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025)
          Length = 698

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 377 RSLRRACRSRVAYTGE*NCCVVRRGHRSS 463
           R L   CR R ++     CC VR+ H +S
Sbjct: 70  RVLPAVCRRRSSFVSRRKCCKVRKNHYAS 98


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 3   EDQIQKHSQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMY 182
           E + Q+H   +      K+  +  ++TV +DG   +V   ++  P  +V   G K     
Sbjct: 274 EPKKQEHPSSQTDTNQKKQDEESPTVTVTSDGEHTTVKVLDAQSPTPKVTING-KTNDGK 332

Query: 183 IVDGNTVTQ 209
             DGNT +Q
Sbjct: 333 SADGNTKSQ 341


>SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)
          Length = 384

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 230 HSNIQKGIQWQRTKSCLQGRSH--CEPSRGLH 319
           H  +QKG+ W   +S + GRS   C  S  LH
Sbjct: 237 HQLLQKGVSWVFNRSRVSGRSRACCRRSVSLH 268


>SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 436 RRPPWSPFQQRDHPRPPSRRPKHLL 510
           R P W+  + +D P  P + PKHL+
Sbjct: 73  RTPEWTSRKLKDIPSDPIKPPKHLM 97


>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 376 PQPPSCLPFPRRLYWRVKLLRRPPWSPFQQ-RDHPRPPSRRP 498
           P PP  L       ++ + L RPP SP Q+ +  PRPP   P
Sbjct: 118 PLPPPSLEVSSHEAFQ-ETLHRPPPSPVQEAKASPRPPRHSP 158


>SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)
          Length = 715

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 245 KGIQWQRTKSCLQGRSHCE 301
           K + W+  + CL+GR HC+
Sbjct: 664 KMVVWEVLRRCLRGRQHCD 682


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,143
Number of Sequences: 59808
Number of extensions: 357826
Number of successful extensions: 1413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -