BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B10f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05) 31 0.44 SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 31 0.76 SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0 SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0 SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26) 30 1.3 SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 2.3 SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 5.4 SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 28 5.4 SB_39019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025) 27 7.1 SB_34777| Best HMM Match : VWA (HMM E-Value=0) 27 7.1 SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3) 27 7.1 SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26) 27 9.4 >SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05) Length = 433 Score = 31.5 bits (68), Expect = 0.44 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -1 Query: 215 YSLSYGVAIDYVHGFYLESTWDDFVERHTGLKKK 114 YS+ YG + H F ESTW+D + R +G +++ Sbjct: 26 YSIQYGRQGSHDHIFLAESTWNDLLARISGKERE 59 >SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) Length = 454 Score = 30.7 bits (66), Expect = 0.76 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = -2 Query: 262 LPLYSLLNVAMPLGFSTV*--VTVLPSTMYMVF-TLNPPGTTSSKGTPDSKKKTDSFGPS 92 +P Y++L + F+T+ +L + ++ F TL PP SS P S PS Sbjct: 71 VPFYNILRAPLFTTFATLRPLYNILRAPLFTTFATLRPPLQHSS--CPSIYYLRYSTPPS 128 Query: 91 VLTVMDLYLLPSLV 50 + + LYLLPSL+ Sbjct: 129 TIFFVSLYLLPSLL 142 >SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 684 Score = 30.3 bits (65), Expect = 1.0 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +2 Query: 323 ARCSCVACTCVQ-SFCIEHRSLRRA-CRSRVAYT 418 A CSC+ CTC + +EH ++R A CRS V T Sbjct: 182 ACCSCLVCTCRRYRRVLEHSTVRPASCRSSVRIT 215 >SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1097 Score = 30.3 bits (65), Expect = 1.0 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +1 Query: 433 LRRPPWSP--FQQRDHPRPPSRRPKHLL 510 L+ P SP F Q HPRPP RPK L+ Sbjct: 103 LKAGPISPYAFPQTVHPRPPPHRPKALM 130 >SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26) Length = 600 Score = 29.9 bits (64), Expect = 1.3 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRESQWH 232 RS W GK+ +HS+W+HR + Q H Sbjct: 88 RSSNPW--GKSSLHSKWEHRKGSLKRHQRH 115 >SB_47305| Best HMM Match : I-set (HMM E-Value=0) Length = 5832 Score = 29.1 bits (62), Expect = 2.3 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Frame = +3 Query: 24 SQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTV 203 S+ KP V +EG +YK T PK + +++ G P + +VK + DG T Sbjct: 189 SELKPDKV--QEGEQYKFTCAVTGKPKPVISWYKDGQP----IKADRRVKDSF--DGTTS 240 Query: 204 TQTVEN--PNGIATFKREYSGNELKVAFKADHTASP 305 T +++ + T+K E + + ++ AD +P Sbjct: 241 TLLIKDVKQDDKGTYKVEITNDLGSISSTADLEVTP 276 >SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 385 Score = 28.7 bits (61), Expect = 3.1 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Frame = +2 Query: 203 NSDCRESQWHSNIQKGIQWQRTKSCLQGRSHCEPSRG----LHRARCSCVACTCVQSFCI 370 N+ C++ H+ K Q C + SH P + H AR SC +S C Sbjct: 89 NTPCKDKLLHNTPCKE-QLSHNTPCKEQLSHNTPCKSSCQTTHHARSSCHTTHSARSSCH 147 Query: 371 EHRSLRRACRS 403 S R +C + Sbjct: 148 TKHSTRSSCHT 158 >SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1147 Score = 28.3 bits (60), Expect = 4.1 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -1 Query: 311 HERARSVIGLEGNF*FVATVFPFECCYAIGILYSLSYGVAIDYV 180 H R RSV+G+ G+F ++ PF C Y + YG + +V Sbjct: 681 HLRFRSVVGIYGSFRSWVSMVPFGCGYLWFLSVVGIYGSFLSWV 724 >SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) Length = 6725 Score = 27.9 bits (59), Expect = 5.4 Identities = 24/71 (33%), Positives = 33/71 (46%) Frame = +2 Query: 293 HCEPSRGLHRARCSCVACTCVQSFCIEHRSLRRACRSRVAYTGE*NCCVVRRGHRSSSAI 472 +C+P G +C C CV +F E SRV TG NC V +G S +A Sbjct: 3229 NCDPQGGYESVQCHSSTCWCVDAFGQE------IANSRV--TGRPNCAV--KG-GSLTAC 3277 Query: 473 IRGLRRAVQNT 505 R + A+Q+T Sbjct: 3278 QRQRQAALQDT 3288 >SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 845 Score = 27.9 bits (59), Expect = 5.4 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -2 Query: 289 SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVF 170 SA+ ++F++ LY+ VA+ + +TV VT P T+Y +F Sbjct: 322 SAILSSFATF-LYTATTVAVFISLTTVAVTGEPLTLYNIF 360 >SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1717 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +2 Query: 272 SCLQGRSHCEPSRGLHRARCSCVACTCVQSFC 367 SC+ G + GLH +CS C V +FC Sbjct: 684 SCVDGSDESGCTCGLHEFQCSSGECIEVATFC 715 >SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) Length = 565 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/37 (32%), Positives = 16/37 (43%) Frame = +2 Query: 281 QGRSHCEPSRGLHRARCSCVACTCVQSFCIEHRSLRR 391 Q + HC P L + C+ C CVQ H + R Sbjct: 194 QDKWHCCPMGSLCSSSCNFARCKCVQFVLTAHGQMTR 230 >SB_39019| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 166 Score = 27.9 bits (59), Expect = 5.4 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +3 Query: 39 TAVLTKEG-NKYKSITVNTDGPKESVFFFESGVP 137 T VL EG NK+K ++ + G +++VF F P Sbjct: 82 TCVLRTEGINKHKKMSTSIKGARQNVFLFNECFP 115 >SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025) Length = 698 Score = 27.5 bits (58), Expect = 7.1 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 377 RSLRRACRSRVAYTGE*NCCVVRRGHRSS 463 R L CR R ++ CC VR+ H +S Sbjct: 70 RVLPAVCRRRSSFVSRRKCCKVRKNHYAS 98 >SB_34777| Best HMM Match : VWA (HMM E-Value=0) Length = 1268 Score = 27.5 bits (58), Expect = 7.1 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = +3 Query: 3 EDQIQKHSQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMY 182 E + Q+H + K+ + ++TV +DG +V ++ P +V G K Sbjct: 274 EPKKQEHPSSQTDTNQKKQDEESPTVTVTSDGEHTTVKVLDAQSPTPKVTING-KTNDGK 332 Query: 183 IVDGNTVTQ 209 DGNT +Q Sbjct: 333 SADGNTKSQ 341 >SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3) Length = 384 Score = 27.5 bits (58), Expect = 7.1 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +2 Query: 230 HSNIQKGIQWQRTKSCLQGRSH--CEPSRGLH 319 H +QKG+ W +S + GRS C S LH Sbjct: 237 HQLLQKGVSWVFNRSRVSGRSRACCRRSVSLH 268 >SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 101 Score = 27.5 bits (58), Expect = 7.1 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +1 Query: 436 RRPPWSPFQQRDHPRPPSRRPKHLL 510 R P W+ + +D P P + PKHL+ Sbjct: 73 RTPEWTSRKLKDIPSDPIKPPKHLM 97 >SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 445 Score = 27.5 bits (58), Expect = 7.1 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +1 Query: 376 PQPPSCLPFPRRLYWRVKLLRRPPWSPFQQ-RDHPRPPSRRP 498 P PP L ++ + L RPP SP Q+ + PRPP P Sbjct: 118 PLPPPSLEVSSHEAFQ-ETLHRPPPSPVQEAKASPRPPRHSP 158 >SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26) Length = 715 Score = 27.1 bits (57), Expect = 9.4 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 245 KGIQWQRTKSCLQGRSHCE 301 K + W+ + CL+GR HC+ Sbjct: 664 KMVVWEVLRRCLRGRQHCD 682 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,155,143 Number of Sequences: 59808 Number of extensions: 357826 Number of successful extensions: 1413 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1260 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1410 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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