Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05) 31 0.44
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 31 0.76
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26) 30 1.3
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 2.3
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 5.4
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 28 5.4
SB_39019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025) 27 7.1
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 27 7.1
SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3) 27 7.1
SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26) 27 9.4
>SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)
Length = 433
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 215 YSLSYGVAIDYVHGFYLESTWDDFVERHTGLKKK 114
YS+ YG + H F ESTW+D + R +G +++
Sbjct: 26 YSIQYGRQGSHDHIFLAESTWNDLLARISGKERE 59
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 30.7 bits (66), Expect = 0.76
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -2
Query: 262 LPLYSLLNVAMPLGFSTV*--VTVLPSTMYMVF-TLNPPGTTSSKGTPDSKKKTDSFGPS 92
+P Y++L + F+T+ +L + ++ F TL PP SS P S PS
Sbjct: 71 VPFYNILRAPLFTTFATLRPLYNILRAPLFTTFATLRPPLQHSS--CPSIYYLRYSTPPS 128
Query: 91 VLTVMDLYLLPSLV 50
+ + LYLLPSL+
Sbjct: 129 TIFFVSLYLLPSLL 142
>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 323 ARCSCVACTCVQ-SFCIEHRSLRRA-CRSRVAYT 418
A CSC+ CTC + +EH ++R A CRS V T
Sbjct: 182 ACCSCLVCTCRRYRRVLEHSTVRPASCRSSVRIT 215
>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 433 LRRPPWSP--FQQRDHPRPPSRRPKHLL 510
L+ P SP F Q HPRPP RPK L+
Sbjct: 103 LKAGPISPYAFPQTVHPRPPPHRPKALM 130
>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
Length = 600
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRESQWH 232
RS W GK+ +HS+W+HR + Q H
Sbjct: 88 RSSNPW--GKSSLHSKWEHRKGSLKRHQRH 115
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 24 SQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTV 203
S+ KP V +EG +YK T PK + +++ G P + +VK + DG T
Sbjct: 189 SELKPDKV--QEGEQYKFTCAVTGKPKPVISWYKDGQP----IKADRRVKDSF--DGTTS 240
Query: 204 TQTVEN--PNGIATFKREYSGNELKVAFKADHTASP 305
T +++ + T+K E + + ++ AD +P
Sbjct: 241 TLLIKDVKQDDKGTYKVEITNDLGSISSTADLEVTP 276
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Frame = +2
Query: 203 NSDCRESQWHSNIQKGIQWQRTKSCLQGRSHCEPSRG----LHRARCSCVACTCVQSFCI 370
N+ C++ H+ K Q C + SH P + H AR SC +S C
Sbjct: 89 NTPCKDKLLHNTPCKE-QLSHNTPCKEQLSHNTPCKSSCQTTHHARSSCHTTHSARSSCH 147
Query: 371 EHRSLRRACRS 403
S R +C +
Sbjct: 148 TKHSTRSSCHT 158
>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1147
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 311 HERARSVIGLEGNF*FVATVFPFECCYAIGILYSLSYGVAIDYV 180
H R RSV+G+ G+F ++ PF C Y + YG + +V
Sbjct: 681 HLRFRSVVGIYGSFRSWVSMVPFGCGYLWFLSVVGIYGSFLSWV 724
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = +2
Query: 293 HCEPSRGLHRARCSCVACTCVQSFCIEHRSLRRACRSRVAYTGE*NCCVVRRGHRSSSAI 472
+C+P G +C C CV +F E SRV TG NC V +G S +A
Sbjct: 3229 NCDPQGGYESVQCHSSTCWCVDAFGQE------IANSRV--TGRPNCAV--KG-GSLTAC 3277
Query: 473 IRGLRRAVQNT 505
R + A+Q+T
Sbjct: 3278 QRQRQAALQDT 3288
>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 289 SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVF 170
SA+ ++F++ LY+ VA+ + +TV VT P T+Y +F
Sbjct: 322 SAILSSFATF-LYTATTVAVFISLTTVAVTGEPLTLYNIF 360
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 272 SCLQGRSHCEPSRGLHRARCSCVACTCVQSFC 367
SC+ G + GLH +CS C V +FC
Sbjct: 684 SCVDGSDESGCTCGLHEFQCSSGECIEVATFC 715
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 281 QGRSHCEPSRGLHRARCSCVACTCVQSFCIEHRSLRR 391
Q + HC P L + C+ C CVQ H + R
Sbjct: 194 QDKWHCCPMGSLCSSSCNFARCKCVQFVLTAHGQMTR 230
>SB_39019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 39 TAVLTKEG-NKYKSITVNTDGPKESVFFFESGVP 137
T VL EG NK+K ++ + G +++VF F P
Sbjct: 82 TCVLRTEGINKHKKMSTSIKGARQNVFLFNECFP 115
>SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025)
Length = 698
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 377 RSLRRACRSRVAYTGE*NCCVVRRGHRSS 463
R L CR R ++ CC VR+ H +S
Sbjct: 70 RVLPAVCRRRSSFVSRRKCCKVRKNHYAS 98
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +3
Query: 3 EDQIQKHSQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMY 182
E + Q+H + K+ + ++TV +DG +V ++ P +V G K
Sbjct: 274 EPKKQEHPSSQTDTNQKKQDEESPTVTVTSDGEHTTVKVLDAQSPTPKVTING-KTNDGK 332
Query: 183 IVDGNTVTQ 209
DGNT +Q
Sbjct: 333 SADGNTKSQ 341
>SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)
Length = 384
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 230 HSNIQKGIQWQRTKSCLQGRSH--CEPSRGLH 319
H +QKG+ W +S + GRS C S LH
Sbjct: 237 HQLLQKGVSWVFNRSRVSGRSRACCRRSVSLH 268
>SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 436 RRPPWSPFQQRDHPRPPSRRPKHLL 510
R P W+ + +D P P + PKHL+
Sbjct: 73 RTPEWTSRKLKDIPSDPIKPPKHLM 97
>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 376 PQPPSCLPFPRRLYWRVKLLRRPPWSPFQQ-RDHPRPPSRRP 498
P PP L ++ + L RPP SP Q+ + PRPP P
Sbjct: 118 PLPPPSLEVSSHEAFQ-ETLHRPPPSPVQEAKASPRPPRHSP 158
>SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)
Length = 715
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 245 KGIQWQRTKSCLQGRSHCE 301
K + W+ + CL+GR HC+
Sbjct: 664 KMVVWEVLRRCLRGRQHCD 682
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,143
Number of Sequences: 59808
Number of extensions: 357826
Number of successful extensions: 1413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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