BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B10f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 34 0.054 Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical pr... 31 0.50 U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 30 1.2 AF024503-6|AAG24094.1| 388|Caenorhabditis elegans Hypothetical ... 30 1.2 AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 29 1.5 Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.0 M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.0 AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 29 2.7 AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 29 2.7 U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical pr... 28 3.5 AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 28 3.5 Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 28 4.7 AL021479-5|CAA16320.2| 420|Caenorhabditis elegans Hypothetical ... 28 4.7 AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 28 4.7 Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical pr... 27 8.1 U58756-4|AAC48082.1| 291|Caenorhabditis elegans Hypothetical pr... 27 8.1 U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical pr... 27 8.1 >AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding protein protein 5 protein. Length = 136 Score = 34.3 bits (75), Expect = 0.054 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Frame = +3 Query: 33 KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVK-TMYIVDGNT--V 203 KPT + GNK+ ++T K + F GV FDE P G + K T+ I DG V Sbjct: 39 KPTLEIKVNGNKWHVNQLSTF--KNTTLEFTLGVEFDETTPDGRQFKSTITIEDGKVVHV 96 Query: 204 TQTVENPNGIATFKREYSGNEL 269 + +++ + + R + G +L Sbjct: 97 QKRIKDSDHDSVITRWFEGEKL 118 >Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical protein T08G3.8 protein. Length = 313 Score = 31.1 bits (67), Expect = 0.50 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = -2 Query: 268 SSLPLYSLLNVAM-PLGFSTV*VTVLPSTMYMVFTLNPPGTTSSKGTPDSKKKTDSFGPS 92 S LY+++ + M PL TV + +L S ++MV+ L S T KKKT++ Sbjct: 190 SETHLYTIIELTMKPL---TVALVIL-SNVFMVWKLR--SNKKSNNTIMKKKKTNA--ER 241 Query: 91 VLTV-MDLYLLPSLVNTAVGL 32 VLT M L LLP LVN + L Sbjct: 242 VLTATMILILLPLLVNVIIAL 262 >U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical protein F59A6.3 protein. Length = 786 Score = 29.9 bits (64), Expect = 1.2 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Frame = -2 Query: 346 TGDAGAASSVESTRGLAV*SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVF- 170 T A +AS +T G + S A+ +S L+S + S+V T PST+ + Sbjct: 350 TSRASSASDDPTTTGPSTTSGSTASTTSGSLFSTSLGSSQSPGSSVSTTPGPSTISGISQ 409 Query: 169 -TLNPPGTTSSKGTPDSKKKTDSFGPS 92 T + P TTS T +D+ GPS Sbjct: 410 STTSGPTTTSEPSTTSGSTVSDTSGPS 436 >AF024503-6|AAG24094.1| 388|Caenorhabditis elegans Hypothetical protein F31F4.17 protein. Length = 388 Score = 29.9 bits (64), Expect = 1.2 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +3 Query: 63 NKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYI 185 NK+ + V+TDGP++ +F D+++ + T+ I Sbjct: 280 NKFNTAIVSTDGPEDGEYFISQNSALDDLLYSKYNCDTVLI 320 >AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical protein Y64G10A.1 protein. Length = 302 Score = 29.5 bits (63), Expect = 1.5 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +2 Query: 221 SQWHSNIQKGIQWQRTKSCLQGRSHCEPSRGLHRARCSCVACTCVQSF 364 S W + K I+W RT+ CL G +C + + C CT + +F Sbjct: 126 SSWGKSRDK-IEWNRTRKCLSGGYNCACVGESEQTKFEC-PCTPMTAF 171 >Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein F29D11.1 protein. Length = 4753 Score = 29.1 bits (62), Expect = 2.0 Identities = 24/62 (38%), Positives = 32/62 (51%) Frame = +3 Query: 33 KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQT 212 K A +T + Y+S TVN G K +F S VP D+ GF +V GN +TQT Sbjct: 1851 KTLAQITTDSAIYRS-TVN-GGNKTKMF--SSAVP-DDAYCLGFDWNGRNLVVGNKITQT 1905 Query: 213 VE 218 +E Sbjct: 1906 IE 1907 >M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related protein protein. Length = 4753 Score = 29.1 bits (62), Expect = 2.0 Identities = 24/62 (38%), Positives = 32/62 (51%) Frame = +3 Query: 33 KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQT 212 K A +T + Y+S TVN G K +F S VP D+ GF +V GN +TQT Sbjct: 1851 KTLAQITTDSAIYRS-TVN-GGNKTKMF--SSAVP-DDAYCLGFDWNGRNLVVGNKITQT 1905 Query: 213 VE 218 +E Sbjct: 1906 IE 1907 >AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical protein Y67A10A.11 protein. Length = 292 Score = 28.7 bits (61), Expect = 2.7 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 230 HSNIQKGIQWQRTKSCLQGRSHCEPSRG---LHRARCSCVACTCVQS 361 +S + WQR+++CL G +C P G + C C T + S Sbjct: 129 YSKVSNQAAWQRSRTCLSGSYNC-PCTGDSVMITHTCPCTPITVITS 174 >AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding protein protein 6 protein. Length = 135 Score = 28.7 bits (61), Expect = 2.7 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 24 SQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTM 179 + KPT + EG+ + S +T K + F+ G FDE P G VK++ Sbjct: 35 ANLKPTLEIKVEGDLWYSNQYSTF--KNTTLSFKLGQEFDETTPDGRTVKSV 84 >U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical protein T03G6.3 protein. Length = 465 Score = 28.3 bits (60), Expect = 3.5 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -1 Query: 224 GILYSLSYGVAIDYVHGFYLESTWDDFVERHTGLKKKN 111 GI + + GV +DYV + TW ++ TGL +N Sbjct: 47 GIRHLATNGVQVDYVTPSFPTHTWPQWMSLSTGLYTEN 84 >AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical protein Y67D8A.1 protein. Length = 1020 Score = 28.3 bits (60), Expect = 3.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 141 DEVVPGGFKVKTMYIVDGNTVTQTVENPN 227 DE VPGG+ V Y VD + + E PN Sbjct: 159 DETVPGGYIVPECYCVDEFIMDKEREQPN 187 >Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical protein Y53C12B.5a protein. Length = 290 Score = 27.9 bits (59), Expect = 4.7 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +2 Query: 302 PSRGLHRARCSCVACTCVQSFCIEHR 379 P RG R C V C C +EHR Sbjct: 105 PLRGHKRTMCQFVTCECTLCTLVEHR 130 >AL021479-5|CAA16320.2| 420|Caenorhabditis elegans Hypothetical protein Y22F5A.1 protein. Length = 420 Score = 27.9 bits (59), Expect = 4.7 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 266 TKSCLQGRSHCEPSRGLHRARCSCVAC 346 T S L + CEP+ G+H SC AC Sbjct: 6 TSSTLTCKICCEPAHGVHFGVASCRAC 32 >AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative transcription factor MAB-3 protein. Length = 290 Score = 27.9 bits (59), Expect = 4.7 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +2 Query: 302 PSRGLHRARCSCVACTCVQSFCIEHR 379 P RG R C V C C +EHR Sbjct: 105 PLRGHKRTMCQFVTCECTLCTLVEHR 130 >Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical protein R05A10.5 protein. Length = 294 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = +2 Query: 254 QWQRTKSCLQGRSHCEPSRGL--HRARCSCVACTCVQSFC 367 QW RT+ CL ++ C S + A+C C + S C Sbjct: 142 QWTRTRKCLSDKAGCPCSGDVTDASAQCPCSQPSDATSIC 181 >U58756-4|AAC48082.1| 291|Caenorhabditis elegans Hypothetical protein F58F9.6 protein. Length = 291 Score = 27.1 bits (57), Expect = 8.1 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +2 Query: 257 WQRTKSCLQGRSHCE 301 W+RT+SCL G + C+ Sbjct: 142 WERTRSCLSGTAGCQ 156 >U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical protein T07H6.5 protein. Length = 575 Score = 27.1 bits (57), Expect = 8.1 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 179 VHSRWQHRNSDCRESQWHSNIQKGIQWQRTKSCLQGRS 292 V+ W + S SQ H I+ I W R K L GR+ Sbjct: 497 VNGEWMPKVSPKCVSQTHPMIEGKILWDRKKRSLPGRA 534 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,610,264 Number of Sequences: 27780 Number of extensions: 261729 Number of successful extensions: 929 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 866 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 929 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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