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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    34   0.054
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.0  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.0  
AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    29   2.7  
U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL021479-5|CAA16320.2|  420|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative tran...    28   4.7  
Z82280-5|CAB05266.1|  294|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 33  KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVK-TMYIVDGNT--V 203
           KPT  +   GNK+    ++T   K +   F  GV FDE  P G + K T+ I DG    V
Sbjct: 39  KPTLEIKVNGNKWHVNQLSTF--KNTTLEFTLGVEFDETTPDGRQFKSTITIEDGKVVHV 96

Query: 204 TQTVENPNGIATFKREYSGNEL 269
            + +++ +  +   R + G +L
Sbjct: 97  QKRIKDSDHDSVITRWFEGEKL 118


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = -2

Query: 268 SSLPLYSLLNVAM-PLGFSTV*VTVLPSTMYMVFTLNPPGTTSSKGTPDSKKKTDSFGPS 92
           S   LY+++ + M PL   TV + +L S ++MV+ L       S  T   KKKT++    
Sbjct: 190 SETHLYTIIELTMKPL---TVALVIL-SNVFMVWKLR--SNKKSNNTIMKKKKTNA--ER 241

Query: 91  VLTV-MDLYLLPSLVNTAVGL 32
           VLT  M L LLP LVN  + L
Sbjct: 242 VLTATMILILLPLLVNVIIAL 262


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -2

Query: 346 TGDAGAASSVESTRGLAV*SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVF- 170
           T  A +AS   +T G +  S   A+ +S  L+S    +     S+V  T  PST+  +  
Sbjct: 350 TSRASSASDDPTTTGPSTTSGSTASTTSGSLFSTSLGSSQSPGSSVSTTPGPSTISGISQ 409

Query: 169 -TLNPPGTTSSKGTPDSKKKTDSFGPS 92
            T + P TTS   T      +D+ GPS
Sbjct: 410 STTSGPTTTSEPSTTSGSTVSDTSGPS 436


>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 63  NKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYI 185
           NK+ +  V+TDGP++  +F       D+++   +   T+ I
Sbjct: 280 NKFNTAIVSTDGPEDGEYFISQNSALDDLLYSKYNCDTVLI 320


>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 221 SQWHSNIQKGIQWQRTKSCLQGRSHCEPSRGLHRARCSCVACTCVQSF 364
           S W  +  K I+W RT+ CL G  +C       + +  C  CT + +F
Sbjct: 126 SSWGKSRDK-IEWNRTRKCLSGGYNCACVGESEQTKFEC-PCTPMTAF 171


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/62 (38%), Positives = 32/62 (51%)
 Frame = +3

Query: 33   KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQT 212
            K  A +T +   Y+S TVN  G K  +F   S VP D+    GF      +V GN +TQT
Sbjct: 1851 KTLAQITTDSAIYRS-TVN-GGNKTKMF--SSAVP-DDAYCLGFDWNGRNLVVGNKITQT 1905

Query: 213  VE 218
            +E
Sbjct: 1906 IE 1907


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/62 (38%), Positives = 32/62 (51%)
 Frame = +3

Query: 33   KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQT 212
            K  A +T +   Y+S TVN  G K  +F   S VP D+    GF      +V GN +TQT
Sbjct: 1851 KTLAQITTDSAIYRS-TVN-GGNKTKMF--SSAVP-DDAYCLGFDWNGRNLVVGNKITQT 1905

Query: 213  VE 218
            +E
Sbjct: 1906 IE 1907


>AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical
           protein Y67A10A.11 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 230 HSNIQKGIQWQRTKSCLQGRSHCEPSRG---LHRARCSCVACTCVQS 361
           +S +     WQR+++CL G  +C P  G   +    C C   T + S
Sbjct: 129 YSKVSNQAAWQRSRTCLSGSYNC-PCTGDSVMITHTCPCTPITVITS 174


>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 24  SQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTM 179
           +  KPT  +  EG+ + S   +T   K +   F+ G  FDE  P G  VK++
Sbjct: 35  ANLKPTLEIKVEGDLWYSNQYSTF--KNTTLSFKLGQEFDETTPDGRTVKSV 84


>U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical
           protein T03G6.3 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 224 GILYSLSYGVAIDYVHGFYLESTWDDFVERHTGLKKKN 111
           GI +  + GV +DYV   +   TW  ++   TGL  +N
Sbjct: 47  GIRHLATNGVQVDYVTPSFPTHTWPQWMSLSTGLYTEN 84


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 141 DEVVPGGFKVKTMYIVDGNTVTQTVENPN 227
           DE VPGG+ V   Y VD   + +  E PN
Sbjct: 159 DETVPGGYIVPECYCVDEFIMDKEREQPN 187


>Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5a protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 302 PSRGLHRARCSCVACTCVQSFCIEHR 379
           P RG  R  C  V C C     +EHR
Sbjct: 105 PLRGHKRTMCQFVTCECTLCTLVEHR 130


>AL021479-5|CAA16320.2|  420|Caenorhabditis elegans Hypothetical
           protein Y22F5A.1 protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 266 TKSCLQGRSHCEPSRGLHRARCSCVAC 346
           T S L  +  CEP+ G+H    SC AC
Sbjct: 6   TSSTLTCKICCEPAHGVHFGVASCRAC 32


>AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative
           transcription factor MAB-3 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 302 PSRGLHRARCSCVACTCVQSFCIEHR 379
           P RG  R  C  V C C     +EHR
Sbjct: 105 PLRGHKRTMCQFVTCECTLCTLVEHR 130


>Z82280-5|CAB05266.1|  294|Caenorhabditis elegans Hypothetical
           protein R05A10.5 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 254 QWQRTKSCLQGRSHCEPSRGL--HRARCSCVACTCVQSFC 367
           QW RT+ CL  ++ C  S  +    A+C C   +   S C
Sbjct: 142 QWTRTRKCLSDKAGCPCSGDVTDASAQCPCSQPSDATSIC 181


>U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical
           protein F58F9.6 protein.
          Length = 291

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 257 WQRTKSCLQGRSHCE 301
           W+RT+SCL G + C+
Sbjct: 142 WERTRSCLSGTAGCQ 156


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 179 VHSRWQHRNSDCRESQWHSNIQKGIQWQRTKSCLQGRS 292
           V+  W  + S    SQ H  I+  I W R K  L GR+
Sbjct: 497 VNGEWMPKVSPKCVSQTHPMIEGKILWDRKKRSLPGRA 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,264
Number of Sequences: 27780
Number of extensions: 261729
Number of successful extensions: 929
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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