Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 34 0.054
Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical pr... 31 0.50
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF024503-6|AAG24094.1| 388|Caenorhabditis elegans Hypothetical ... 30 1.2
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 29 1.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.0
AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 29 2.7
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 29 2.7
U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical pr... 28 3.5
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 28 3.5
Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL021479-5|CAA16320.2| 420|Caenorhabditis elegans Hypothetical ... 28 4.7
AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 28 4.7
Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical pr... 27 8.1
U58756-4|AAC48082.1| 291|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 34.3 bits (75), Expect = 0.054
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +3
Query: 33 KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVK-TMYIVDGNT--V 203
KPT + GNK+ ++T K + F GV FDE P G + K T+ I DG V
Sbjct: 39 KPTLEIKVNGNKWHVNQLSTF--KNTTLEFTLGVEFDETTPDGRQFKSTITIEDGKVVHV 96
Query: 204 TQTVENPNGIATFKREYSGNEL 269
+ +++ + + R + G +L
Sbjct: 97 QKRIKDSDHDSVITRWFEGEKL 118
>Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical
protein T08G3.8 protein.
Length = 313
Score = 31.1 bits (67), Expect = 0.50
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = -2
Query: 268 SSLPLYSLLNVAM-PLGFSTV*VTVLPSTMYMVFTLNPPGTTSSKGTPDSKKKTDSFGPS 92
S LY+++ + M PL TV + +L S ++MV+ L S T KKKT++
Sbjct: 190 SETHLYTIIELTMKPL---TVALVIL-SNVFMVWKLR--SNKKSNNTIMKKKKTNA--ER 241
Query: 91 VLTV-MDLYLLPSLVNTAVGL 32
VLT M L LLP LVN + L
Sbjct: 242 VLTATMILILLPLLVNVIIAL 262
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -2
Query: 346 TGDAGAASSVESTRGLAV*SALKATFSSLPLYSLLNVAMPLGFSTV*VTVLPSTMYMVF- 170
T A +AS +T G + S A+ +S L+S + S+V T PST+ +
Sbjct: 350 TSRASSASDDPTTTGPSTTSGSTASTTSGSLFSTSLGSSQSPGSSVSTTPGPSTISGISQ 409
Query: 169 -TLNPPGTTSSKGTPDSKKKTDSFGPS 92
T + P TTS T +D+ GPS
Sbjct: 410 STTSGPTTTSEPSTTSGSTVSDTSGPS 436
>AF024503-6|AAG24094.1| 388|Caenorhabditis elegans Hypothetical
protein F31F4.17 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 63 NKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYI 185
NK+ + V+TDGP++ +F D+++ + T+ I
Sbjct: 280 NKFNTAIVSTDGPEDGEYFISQNSALDDLLYSKYNCDTVLI 320
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 221 SQWHSNIQKGIQWQRTKSCLQGRSHCEPSRGLHRARCSCVACTCVQSF 364
S W + K I+W RT+ CL G +C + + C CT + +F
Sbjct: 126 SSWGKSRDK-IEWNRTRKCLSGGYNCACVGESEQTKFEC-PCTPMTAF 171
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/62 (38%), Positives = 32/62 (51%)
Frame = +3
Query: 33 KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQT 212
K A +T + Y+S TVN G K +F S VP D+ GF +V GN +TQT
Sbjct: 1851 KTLAQITTDSAIYRS-TVN-GGNKTKMF--SSAVP-DDAYCLGFDWNGRNLVVGNKITQT 1905
Query: 213 VE 218
+E
Sbjct: 1906 IE 1907
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/62 (38%), Positives = 32/62 (51%)
Frame = +3
Query: 33 KPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTMYIVDGNTVTQT 212
K A +T + Y+S TVN G K +F S VP D+ GF +V GN +TQT
Sbjct: 1851 KTLAQITTDSAIYRS-TVN-GGNKTKMF--SSAVP-DDAYCLGFDWNGRNLVVGNKITQT 1905
Query: 213 VE 218
+E
Sbjct: 1906 IE 1907
>AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical
protein Y67A10A.11 protein.
Length = 292
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 HSNIQKGIQWQRTKSCLQGRSHCEPSRG---LHRARCSCVACTCVQS 361
+S + WQR+++CL G +C P G + C C T + S
Sbjct: 129 YSKVSNQAAWQRSRTCLSGSYNC-PCTGDSVMITHTCPCTPITVITS 174
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 24 SQFKPTAVLTKEGNKYKSITVNTDGPKESVFFFESGVPFDEVVPGGFKVKTM 179
+ KPT + EG+ + S +T K + F+ G FDE P G VK++
Sbjct: 35 ANLKPTLEIKVEGDLWYSNQYSTF--KNTTLSFKLGQEFDETTPDGRTVKSV 84
>U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical
protein T03G6.3 protein.
Length = 465
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 224 GILYSLSYGVAIDYVHGFYLESTWDDFVERHTGLKKKN 111
GI + + GV +DYV + TW ++ TGL +N
Sbjct: 47 GIRHLATNGVQVDYVTPSFPTHTWPQWMSLSTGLYTEN 84
>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
protein Y67D8A.1 protein.
Length = 1020
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 141 DEVVPGGFKVKTMYIVDGNTVTQTVENPN 227
DE VPGG+ V Y VD + + E PN
Sbjct: 159 DETVPGGYIVPECYCVDEFIMDKEREQPN 187
>Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical
protein Y53C12B.5a protein.
Length = 290
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 302 PSRGLHRARCSCVACTCVQSFCIEHR 379
P RG R C V C C +EHR
Sbjct: 105 PLRGHKRTMCQFVTCECTLCTLVEHR 130
>AL021479-5|CAA16320.2| 420|Caenorhabditis elegans Hypothetical
protein Y22F5A.1 protein.
Length = 420
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 266 TKSCLQGRSHCEPSRGLHRARCSCVAC 346
T S L + CEP+ G+H SC AC
Sbjct: 6 TSSTLTCKICCEPAHGVHFGVASCRAC 32
>AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative
transcription factor MAB-3 protein.
Length = 290
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 302 PSRGLHRARCSCVACTCVQSFCIEHR 379
P RG R C V C C +EHR
Sbjct: 105 PLRGHKRTMCQFVTCECTLCTLVEHR 130
>Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical
protein R05A10.5 protein.
Length = 294
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 254 QWQRTKSCLQGRSHCEPSRGL--HRARCSCVACTCVQSFC 367
QW RT+ CL ++ C S + A+C C + S C
Sbjct: 142 QWTRTRKCLSDKAGCPCSGDVTDASAQCPCSQPSDATSIC 181
>U58756-4|AAC48082.1| 291|Caenorhabditis elegans Hypothetical
protein F58F9.6 protein.
Length = 291
Score = 27.1 bits (57), Expect = 8.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 257 WQRTKSCLQGRSHCE 301
W+RT+SCL G + C+
Sbjct: 142 WERTRSCLSGTAGCQ 156
>U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical
protein T07H6.5 protein.
Length = 575
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 179 VHSRWQHRNSDCRESQWHSNIQKGIQWQRTKSCLQGRS 292
V+ W + S SQ H I+ I W R K L GR+
Sbjct: 497 VNGEWMPKVSPKCVSQTHPMIEGKILWDRKKRSLPGRA 534
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,264
Number of Sequences: 27780
Number of extensions: 261729
Number of successful extensions: 929
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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