Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    46   3e-07
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.7  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 45.6 bits (103), Expect = 3e-07
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +3

Query: 24  SQFKPTAVLTKEGNKYKSITVNTDGP-KESVFFFESGVPFDEVVPGGFKVKTMYIVDGNT 200
           S   P   LT+    Y   T+ T  P K +   F+ G  F+E    G KVK++  +DGN 
Sbjct: 35  SSVSPVVELTENNGLY---TLKTTSPFKNTEIKFKLGEEFEEETVDGRKVKSVCTLDGNK 91

Query: 201 VTQTVENPNGIATFKREYSGNELKVAFKAD 290
           + Q V+      T +RE+S  E+K   K D
Sbjct: 92  LIQ-VQKGEKQTTIEREFSSTEMKAIMKVD 120


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRES 223
           RSR R  Q  +  HSR++    + R S
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRES 223
           RSR R  Q  +  HSR++    + R S
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRES 223
           RSR R  Q  +  HSR++    + R S
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRES 223
           RSR R  Q  +  HSR++    + R S
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 143 RSRPRWIQGKNHVHSRWQHRNSDCRES 223
           RSR R  Q  +  HSR++    + R S
Sbjct: 218 RSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 212 SLSYGVAIDYVHGFYLESTWDDFVERHTGLKKKN 111
           SL++ +  D    + L   W DFV+ +    K++
Sbjct: 259 SLNHTLTKDQPETYELVKEWRDFVDNYAEENKRD 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,799
Number of Sequences: 438
Number of extensions: 3234
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)