Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B08f
         (319 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   0.93 
UniRef50_Q3ZY52 Cluster: ABC transporter, ATP-binding/permease p...    33   1.6  
UniRef50_Q3Z7A6 Cluster: ABC transporter, ATP-binding/permease p...    31   6.6  
UniRef50_Q0U9M3 Cluster: Predicted protein; n=1; Phaeosphaeria n...    31   6.6  
UniRef50_Q1PUI8 Cluster: Thiamine-phosphate pyrophosphorylase; n...    30   8.7  
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    30   8.7  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 0.93
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 278 RGGARYPIRPIVSR 319
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_Q3ZY52 Cluster: ABC transporter, ATP-binding/permease
           protein; n=11; Bacteria|Rep: ABC transporter,
           ATP-binding/permease protein - Dehalococcoides sp.
           (strain CBDB1)
          Length = 741

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 196 DKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEK-IVLQNSCLFSKRKPRELTEKFT 35
           D  LRK  +K + N  VLI+    N    +E+ IVL+N  +  K   +EL E  T
Sbjct: 670 DATLRKALKKETHNATVLIVAQRINTVMNAEQIIVLENGMIVGKGTHKELMENCT 724


>UniRef50_Q3Z7A6 Cluster: ABC transporter, ATP-binding/permease
           protein; n=7; Bacteria|Rep: ABC transporter,
           ATP-binding/permease protein - Dehalococcoides
           ethenogenes (strain 195)
          Length = 741

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 196 DKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEK-IVLQNSCLFSKRKPRELTEKFT 35
           D  LRK  +K + N  VLI+    N    +E+ IVL N  +  K   +EL E  T
Sbjct: 670 DAALRKALKKETHNATVLIVAQRINTVMHAEQIIVLDNGRIAGKGTHKELMENCT 724


>UniRef50_Q0U9M3 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 412

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 211 SADGVDKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEKIVLQNSCLFSKRKPRELTEKFTA 32
           +ADG +K  ++E ++  PN     + + F YAQT+  IV   + L +  +P  + EK   
Sbjct: 125 AADGKNKKRKREKKEKDPNAPKKPLTAAFLYAQTARPIV--RADLEAALEPGAILEKNAV 182

Query: 31  TLFTLNLW 8
            L     W
Sbjct: 183 NLEVTKRW 190


>UniRef50_Q1PUI8 Cluster: Thiamine-phosphate pyrophosphorylase; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep:
           Thiamine-phosphate pyrophosphorylase - Candidatus
           Kuenenia stuttgartiensis
          Length = 228

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 172 RKGSPNTIVLIIRSGFNYAQTSEKIVLQNSCLFSKRKPRELTEKFTATLFTLN 14
           RK   N +  +IR G +  Q  EK +  N  L   +  RE+T + T TLF +N
Sbjct: 27  RKNGGNILQEVIRGGADAVQLREKTMPDNEFLAIAKDFREITGQ-TNTLFIIN 78


>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 317 DSL*GELGTGPPLE 276
           DSL GELGTGPPLE
Sbjct: 279 DSLYGELGTGPPLE 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,258,678
Number of Sequences: 1657284
Number of extensions: 5275687
Number of successful extensions: 10676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10670
length of database: 575,637,011
effective HSP length: 82
effective length of database: 439,739,723
effective search space used: 10114013629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)