Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B08f
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0197 + 1456296-1456668,1456930-1458746 29 1.0
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 29 1.0
01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816 29 1.0
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891... 27 2.4
01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835 27 2.4
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42... 27 3.2
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562... 27 4.2
07_03_1766 + 29334576-29335790,29335865-29336362 25 9.7
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 25 9.7
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 25 9.7
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 127 FNYAQTSEKIVLQNSCLFSKRKPRELTEKFTATLFTLNL 11
FNY Q + L SCL RK R E +L +++L
Sbjct: 688 FNYLQAKTLVKLAVSCLEEDRKKRPTMESIVESLLSVDL 726
>11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 127 FNYAQTSEKIVLQNSCLFSKRKPRELTEKFTATLFTLNL 11
FNY Q + L SCL RK R E +L +++L
Sbjct: 1093 FNYLQAKTLVKLAVSCLEEDRKKRPTMESIVESLLSVDL 1131
>01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816
Length = 347
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 15 FSVNRVAVNFSVNSLGFRFENKQEFWRTIFSDVCA*LKPLRIIKTIVLGLPFLYSFLNPL 194
FS N++ VN ++N+L RF + W+ F+D + + ++ + + +NP
Sbjct: 263 FSDNQLRVNATMNALVTRFAANETEWKQRFADAMVKMGNIEVLTGGAGQIRLNCNVVNPS 322
Query: 195 STPSA 209
S+ S+
Sbjct: 323 SSSSS 327
>02_05_0329 -
27986261-27987372,27988632-27988638,27988999-27989128,
27989157-27989216,27989318-27989970,27990056-27990526
Length = 810
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 166 LFFILSSIPYPRHLLTLQEKLH 231
LF LSS+ +P+HLL +Q ++H
Sbjct: 168 LFERLSSLGHPKHLLDVQYRMH 189
>01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835
Length = 346
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 15 FSVNRVAVNFSVNSLGFRFENKQEFWRTIFSD 110
FS N++ VN ++N+L RF + W+ F+D
Sbjct: 265 FSDNQLRVNATMNALVTRFAANEAEWKQRFAD 296
>01_01_0056 +
422141-422379,422524-422620,422697-422774,422871-422930,
423019-423123,423743-423856,424145-424186,424380-424496,
424568-424755,425502-425785,425869-425990,426118-426160,
426265-426356,427331-427379,427623-427693,427793-427912,
428586-428674,429266-429311,429926-429973
Length = 667
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 223 FLVVSADGVDKGLRKE*RKGSPNTIVLIIR 134
FL+ SADGV+ L+ +TIVL++R
Sbjct: 618 FLITSADGVEYNLKPAENALPRDTIVLVLR 647
>03_05_0096 +
20754478-20754584,20755548-20755677,20756212-20756268,
20756741-20756794,20757610-20758287
Length = 341
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 203 WRG*GIEERIKKRK-SQHNSFNYTKWF*LRANIREN 99
WR I ER+K+ K S + N T W LRA +R+N
Sbjct: 254 WRH--ISERLKEHKASVKHITNMTSWNELRARLRKN 287
>07_03_1766 + 29334576-29335790,29335865-29336362
Length = 570
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 127 FNYAQTSEKIVLQNSCLFSKRKPRE 53
F +Q S+ +VLQN CL RKP +
Sbjct: 397 FGNSQASKIVVLQN-CLLQPRKPMD 420
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 223 FLVVSADGVDKGLRKE*RKGSPNTIVLIIR 134
F +++ADG + L+ S +TIVLI+R
Sbjct: 725 FSILAADGAEYNLKPAENAPSRDTIVLILR 754
>03_05_0327 - 23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 151 IVLIIRSGFNYAQTSEKIVLQNSCLFSKRKPRE 53
I+++IRS F YA +VL NS + S+ P E
Sbjct: 943 ILMLIRSSFTYAAKLLHLVLANS-IESQSPPEE 974
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,313,358
Number of Sequences: 37544
Number of extensions: 138178
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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