Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B08f
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.62 
SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)                  28   1.9  
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_45672| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  

>SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 214 VSADGVDKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEKIV--LQNSCLFSKRKPRELTEK 41
           V   G ++ +R++   G    +   +RSG NY   S+  +  L+N C+    KPR     
Sbjct: 61  VHLSGYEQIIRRDRTSGGGGRVCFYVRSGINYKVRSDLNIPDLENLCI-EINKPR----- 114

Query: 40  FTATLFTLNLW 8
             +T F LN W
Sbjct: 115 --STPFLLNTW 123


>SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)
          Length = 324

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 146 FNYTKWF*LRANIRENCSPKFLFIFKTKAKRINGEVYCHSIYAKSVD 6
           FN   WF L A+I   C PK L   K+      G V C S  +++ D
Sbjct: 128 FNILLWFALVAHI--GCPPKLLNFIKSFHDGTRGTVKCESNSSEAFD 172


>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 101 NCSPKFLFIFKTKAKRINGEVYCHSIYAKSVD 6
           +C P+F FI   +A   N E Y  SI+ ++ +
Sbjct: 144 SCEPEFFFIVVYRAANDNRESYFRSIFDRAAN 175


>SB_45672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 83  RILENNFLGCLRVIKTTSYN*NYCV 157
           ++ ENN LG +  ++   YN NY V
Sbjct: 2   KLNENNLLGAVNELRAKGYNDNYIV 26


>SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 138 YEVVLITRKHPRKLFSKILVYFQNE 64
           Y  +  TR  P K F  ILVY QN+
Sbjct: 661 YLEIPATRASPSKWFKNILVYLQNK 685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,605,165
Number of Sequences: 59808
Number of extensions: 165905
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)