BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B08f (319 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.62 SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033) 28 1.9 SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4 SB_45672| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8 SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8 >SB_52862| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 469 Score = 29.5 bits (63), Expect = 0.62 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = -1 Query: 214 VSADGVDKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEKIV--LQNSCLFSKRKPRELTEK 41 V G ++ +R++ G + +RSG NY S+ + L+N C+ KPR Sbjct: 61 VHLSGYEQIIRRDRTSGGGGRVCFYVRSGINYKVRSDLNIPDLENLCI-EINKPR----- 114 Query: 40 FTATLFTLNLW 8 +T F LN W Sbjct: 115 --STPFLLNTW 123 >SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033) Length = 324 Score = 27.9 bits (59), Expect = 1.9 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -3 Query: 146 FNYTKWF*LRANIRENCSPKFLFIFKTKAKRINGEVYCHSIYAKSVD 6 FN WF L A+I C PK L K+ G V C S +++ D Sbjct: 128 FNILLWFALVAHI--GCPPKLLNFIKSFHDGTRGTVKCESNSSEAFD 172 >SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 26.6 bits (56), Expect = 4.4 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -3 Query: 101 NCSPKFLFIFKTKAKRINGEVYCHSIYAKSVD 6 +C P+F FI +A N E Y SI+ ++ + Sbjct: 144 SCEPEFFFIVVYRAANDNRESYFRSIFDRAAN 175 >SB_45672| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 181 Score = 26.2 bits (55), Expect = 5.8 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 83 RILENNFLGCLRVIKTTSYN*NYCV 157 ++ ENN LG + ++ YN NY V Sbjct: 2 KLNENNLLGAVNELRAKGYNDNYIV 26 >SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 864 Score = 26.2 bits (55), Expect = 5.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 138 YEVVLITRKHPRKLFSKILVYFQNE 64 Y + TR P K F ILVY QN+ Sbjct: 661 YLEIPATRASPSKWFKNILVYLQNK 685 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,605,165 Number of Sequences: 59808 Number of extensions: 165905 Number of successful extensions: 315 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 310 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 315 length of database: 16,821,457 effective HSP length: 72 effective length of database: 12,515,281 effective search space used: 413004273 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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