BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B08f (319 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 28 1.3 U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 28 1.3 AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 27 3.9 Z66564-1|CAA91471.1| 329|Caenorhabditis elegans Hypothetical pr... 26 5.1 Z48795-4|CAA88728.1| 236|Caenorhabditis elegans Hypothetical pr... 26 5.1 Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical pr... 25 8.9 Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 25 8.9 Z68114-9|CAA92156.1| 320|Caenorhabditis elegans Hypothetical pr... 25 8.9 U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g ... 25 8.9 >U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily assigned gene nameprotein 24, isoform b protein. Length = 408 Score = 28.3 bits (60), Expect = 1.3 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 309 IGRIGYRAPPRVFFFFFY 256 IG G+ APP VF FFF+ Sbjct: 348 IGAFGHEAPPLVFKFFFW 365 >U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily assigned gene nameprotein 24, isoform a protein. Length = 406 Score = 28.3 bits (60), Expect = 1.3 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 309 IGRIGYRAPPRVFFFFFY 256 IG G+ APP VF FFF+ Sbjct: 346 IGAFGHEAPPLVFKFFFW 363 >AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical protein F52F10.2 protein. Length = 508 Score = 26.6 bits (56), Expect = 3.9 Identities = 17/66 (25%), Positives = 32/66 (48%) Frame = +1 Query: 40 TSPLILLAFVLKINKNFGEQFSRMFARN*NHFV*LKLLCWDFLFFILSSIPYPRHLLTLQ 219 +SP IL A++ ++ + S+ FA + + L ++C + ++IPYP + Sbjct: 165 SSPSILRAYIAAVS--MPKDRSKAFAAM-SLSMTLSIICGPLIQMAFTTIPYPGFTIIPH 221 Query: 220 EKLHAY 237 K H Y Sbjct: 222 VKFHVY 227 >Z66564-1|CAA91471.1| 329|Caenorhabditis elegans Hypothetical protein F52D10.2 protein. Length = 329 Score = 26.2 bits (55), Expect = 5.1 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = -3 Query: 92 PK-FLFIFKTKAKRINGEVYCHSIYAK 15 PK F +I+K KR+ E+ CH++ K Sbjct: 111 PKVFCWIYKHDGKRLKPELRCHAVLCK 137 >Z48795-4|CAA88728.1| 236|Caenorhabditis elegans Hypothetical protein R05H5.5 protein. Length = 236 Score = 26.2 bits (55), Expect = 5.1 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -2 Query: 198 WIRD*GKNKEKEVPTQ*F*LYEVVLITRKHPRKLFSKILVY 76 WIRD N+ KE+ Q + Y +L++ S IL+Y Sbjct: 104 WIRDNKNNEAKELTDQEWMFYRCLLLSVVEIFSFISAILMY 144 >Z78019-2|CAB01451.1| 347|Caenorhabditis elegans Hypothetical protein ZK863.5 protein. Length = 347 Score = 25.4 bits (53), Expect = 8.9 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 99 IFSDVCA*LKPLRIIKTIVL-GLPFLYSFLNPLSTP 203 IFS +C L LRI+++ VL L++ L P+ P Sbjct: 243 IFSSICFLLGQLRIVESPVLESFTLLFAVLVPVINP 278 >Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein T06E4.3a protein. Length = 2531 Score = 25.4 bits (53), Expect = 8.9 Identities = 11/42 (26%), Positives = 23/42 (54%) Frame = -1 Query: 127 FNYAQTSEKIVLQNSCLFSKRKPRELTEKFTATLFTLNLWIS 2 FN + +K++ + +CL + R E + +L TL+ W++ Sbjct: 1591 FNSTEAIQKLIDELNCLEYSQIERNEQEDYLNSLKTLSQWVN 1632 >Z68114-9|CAA92156.1| 320|Caenorhabditis elegans Hypothetical protein F17A2.12 protein. Length = 320 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -3 Query: 95 SPKFLFIFKTKA-KRINGEVYCHSIYAKS 12 SP F F+ K +RIN + Y HS + KS Sbjct: 202 SPFISFFFREKILRRINSQFYQHSKWKKS 230 >U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g protein signalingprotein 6 protein. Length = 737 Score = 25.4 bits (53), Expect = 8.9 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 123 LKPLRIIKTIVLGLPFLYSFLNPLSTPS 206 L+ + ++ I+ LP +SF NP STP+ Sbjct: 317 LRLVPVVSFIIEFLPANFSFKNPASTPT 344 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,303,577 Number of Sequences: 27780 Number of extensions: 130734 Number of successful extensions: 322 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 322 length of database: 12,740,198 effective HSP length: 71 effective length of database: 10,767,818 effective search space used: 366105812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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