Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B08f
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   1.3  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   1.3  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z48795-4|CAA88728.1|  236|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical pr...    25   8.9  
U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g ...    25   8.9  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 309 IGRIGYRAPPRVFFFFFY 256
           IG  G+ APP VF FFF+
Sbjct: 348 IGAFGHEAPPLVFKFFFW 365


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 309 IGRIGYRAPPRVFFFFFY 256
           IG  G+ APP VF FFF+
Sbjct: 346 IGAFGHEAPPLVFKFFFW 363


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 40  TSPLILLAFVLKINKNFGEQFSRMFARN*NHFV*LKLLCWDFLFFILSSIPYPRHLLTLQ 219
           +SP IL A++  ++    +  S+ FA   +  + L ++C   +    ++IPYP   +   
Sbjct: 165 SSPSILRAYIAAVS--MPKDRSKAFAAM-SLSMTLSIICGPLIQMAFTTIPYPGFTIIPH 221

Query: 220 EKLHAY 237
            K H Y
Sbjct: 222 VKFHVY 227


>Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical
           protein F52D10.2 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 92  PK-FLFIFKTKAKRINGEVYCHSIYAK 15
           PK F +I+K   KR+  E+ CH++  K
Sbjct: 111 PKVFCWIYKHDGKRLKPELRCHAVLCK 137


>Z48795-4|CAA88728.1|  236|Caenorhabditis elegans Hypothetical
           protein R05H5.5 protein.
          Length = 236

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 198 WIRD*GKNKEKEVPTQ*F*LYEVVLITRKHPRKLFSKILVY 76
           WIRD   N+ KE+  Q +  Y  +L++        S IL+Y
Sbjct: 104 WIRDNKNNEAKELTDQEWMFYRCLLLSVVEIFSFISAILMY 144


>Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK863.5 protein.
          Length = 347

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 99  IFSDVCA*LKPLRIIKTIVL-GLPFLYSFLNPLSTP 203
           IFS +C  L  LRI+++ VL     L++ L P+  P
Sbjct: 243 IFSSICFLLGQLRIVESPVLESFTLLFAVLVPVINP 278


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 127  FNYAQTSEKIVLQNSCLFSKRKPRELTEKFTATLFTLNLWIS 2
            FN  +  +K++ + +CL   +  R   E +  +L TL+ W++
Sbjct: 1591 FNSTEAIQKLIDELNCLEYSQIERNEQEDYLNSLKTLSQWVN 1632


>Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical
           protein F17A2.12 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 95  SPKFLFIFKTKA-KRINGEVYCHSIYAKS 12
           SP   F F+ K  +RIN + Y HS + KS
Sbjct: 202 SPFISFFFREKILRRINSQFYQHSKWKKS 230


>U46669-3|AAA85744.2|  737|Caenorhabditis elegans Regulator of g
           protein signalingprotein 6 protein.
          Length = 737

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 123 LKPLRIIKTIVLGLPFLYSFLNPLSTPS 206
           L+ + ++  I+  LP  +SF NP STP+
Sbjct: 317 LRLVPVVSFIIEFLPANFSFKNPASTPT 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,303,577
Number of Sequences: 27780
Number of extensions: 130734
Number of successful extensions: 322
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)