Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B08f
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 29 0.67
At3g57520.3 68416.m06405 alkaline alpha galactosidase, putative ... 29 0.89
At3g57520.2 68416.m06404 alkaline alpha galactosidase, putative ... 29 0.89
At3g57520.1 68416.m06403 alkaline alpha galactosidase, putative ... 29 0.89
At5g41890.1 68418.m05100 GDSL-motif lipase/hydrolase family prot... 28 1.6
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 27 2.7
At2g23830.1 68415.m02847 vesicle-associated membrane protein, pu... 26 4.8
At1g29790.1 68414.m03642 expressed protein 25 8.3
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 81 QEFWRTIFSDV--CA*LKPLRIIKTIVLGLPFLYSFLNPLSTP 203
Q FW IF + CA PL T+ L LY + +PL P
Sbjct: 2 QNFWFAIFFFLLTCAPPSPLSYASTVTLSRRLLYDYESPLPLP 44
>At3g57520.3 68416.m06405 alkaline alpha galactosidase, putative
similar to alkaline alpha galactosidase II [Cucumis
melo] GI:29838631; contains Pfam profile PF05691:
Raffinose synthase or seed imbibition protein Sip1
Length = 565
Score = 28.7 bits (61), Expect = 0.89
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 214 VSADGVDKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEK---IVLQNSCLFSKR 65
V+A+GVD+GL+ G+P LII G+ + EK V+Q F+ R
Sbjct: 212 VTAEGVDEGLKSLSEGGTPPKF-LIIDDGWQQIENKEKDENCVVQEGAQFATR 263
>At3g57520.2 68416.m06404 alkaline alpha galactosidase, putative
similar to alkaline alpha galactosidase II [Cucumis
melo] GI:29838631; contains Pfam profile PF05691:
Raffinose synthase or seed imbibition protein Sip1
Length = 656
Score = 28.7 bits (61), Expect = 0.89
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 214 VSADGVDKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEK---IVLQNSCLFSKR 65
V+A+GVD+GL+ G+P LII G+ + EK V+Q F+ R
Sbjct: 212 VTAEGVDEGLKSLSEGGTPPKF-LIIDDGWQQIENKEKDENCVVQEGAQFATR 263
>At3g57520.1 68416.m06403 alkaline alpha galactosidase, putative
similar to alkaline alpha galactosidase II [Cucumis
melo] GI:29838631; contains Pfam profile PF05691:
Raffinose synthase or seed imbibition protein Sip1
Length = 773
Score = 28.7 bits (61), Expect = 0.89
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 214 VSADGVDKGLRKE*RKGSPNTIVLIIRSGFNYAQTSEK---IVLQNSCLFSKR 65
V+A+GVD+GL+ G+P LII G+ + EK V+Q F+ R
Sbjct: 212 VTAEGVDEGLKSLSEGGTPPKF-LIIDDGWQQIENKEKDENCVVQEGAQFATR 263
>At5g41890.1 68418.m05100 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL3 (GI:15054386), EXL1
(GI:15054382), EXL2 (GI:15054384) [Arabidopsis
thaliana]; contains Pfam profile PF00657:
Lipase/Acylhydrolase with GDSL-like motif
Length = 369
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 160 PNTIVLIIRSGFNYAQTSEKIVLQNSCLFSKRKP-RELTEKF 38
PNT IR+G NYA + I+ LF R P RE F
Sbjct: 94 PNTEANTIRNGINYASGAAGILDDTGLLFIGRVPLREQVSNF 135
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 180 KNKEKEVPTQ*F*LYEVVLITRKHPRKLFSKILVYFQNES 61
K KE + PT F +++L+ H RK S +L+ + E+
Sbjct: 267 KMKELKFPTSVFACNQLLLLYSMHDRKKISDVLLLMEREN 306
>At2g23830.1 68415.m02847 vesicle-associated membrane protein,
putative / VAMP, putative similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 149
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 122 IKTTSYN*NYCVGTSFSLFFPQS 190
+KTT+ N NYCV ++ L P+S
Sbjct: 42 VKTTNRN-NYCVRPNYGLILPKS 63
>At1g29790.1 68414.m03642 expressed protein
Length = 378
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 236 YAC-SFSCSVSRWRG*GIEERIKKRKSQHNSF 144
Y+C SF C ++++ G + ++K KSQ +++
Sbjct: 173 YSCKSFDCLITKFSDLGFDLSLEKSKSQFSAY 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,822,066
Number of Sequences: 28952
Number of extensions: 119712
Number of successful extensions: 249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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