Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.14
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 28 0.73
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 27 2.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 3.0
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 26 3.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 6.8
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 6.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 9.0
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 25 9.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 9.0
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 9.0
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.0
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 137 AINEVGTSAESPTAFER---TREAVPSRGPSDVSANATSSTTVVVL 265
A NE + +P E T +VP G + SAN TSST++V L
Sbjct: 189 ASNEASGTNNNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYL 234
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 28.3 bits (60), Expect = 0.73
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +2
Query: 212 GPSDVSANATSSTTVVVLWGDISAQDQNGLIEGYKVCYAAVTPPPRPEHKKIECQAIPSN 391
GP V N + ++V D+ NG+I G V A ++ E+K E +IP
Sbjct: 196 GPETV-LNVPENAQLLVTEKDVIIYSSNGVIYGIHVSMADISQLLIDEYKTFEWSSIPGK 254
Query: 392 Q-THTVTLTELRKYVVYQIQVL 454
+ +++T+ V Y ++
Sbjct: 255 RHGYSITVDSQSTPVTYLFVII 276
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 131 YVFRRPTTPPNWLRHVNW 78
++ +P T NW RH+NW
Sbjct: 47 HIQEQPWTMQNWWRHLNW 64
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 325 RGRDAAAAPRTQEDRMSSNTLQSDAHGHTDRAQEICGVPDTGARLHEAGRRSPER 489
R R + +P R N +SD + R + PD +R + RRSP+R
Sbjct: 112 RLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPKR 166
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 59 IIEDHTANSHVLANLEEWSVY 121
+++ H N++++ N EWSVY
Sbjct: 278 VVKHHICNANLMRNGAEWSVY 298
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 41 NDTLHSIIEDHTANSHVLANLE 106
+DTLH +I D+ + +L N+E
Sbjct: 2045 SDTLHVLIRDYRESRKILLNIE 2066
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 338 PPPRPEHKKIECQAIPSNQTHTVTLTELRKYVVYQIQVLGYTRLGDGALS 487
P P+ +E P +T+TE+R+ V ++ +G+ ++ A S
Sbjct: 334 PQLHPDGTFVETITKPKGLHSRITMTEMRRRVASMLEYIGHIQVEMAAQS 383
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 113 SVYEIRMTAINEVGTSAESPTAFERTREAVPSRGPSDVSANATSSTTVVVLWGDI 277
+V+E + +I++V T+ S T E E +PS S+ S+ +T L ++
Sbjct: 557 NVFEQLLFSISKVTTNGPSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEV 611
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 187 DQGSCAITRPERRISERHF 243
DQGS +TR +++I ER+F
Sbjct: 69 DQGSNKMTRIQQKIQERNF 87
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 41 NDTLHSIIEDHTANSHVLANLE 106
+DTLH +I++ + ++L NLE
Sbjct: 2042 SDTLHFLIKEFRSKRNILLNLE 2063
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Frame = +2
Query: 263 LWGDISAQDQNG--LIEGYKVCYAAVTPPPRPEHKKIECQAIPSNQTHT 403
+W D+ A Q I+G C AA++ H K Q S HT
Sbjct: 522 IWKDLIADGQISKLYIDGKHRCEAAISSHSSESHSKRTTQQPKSTPNHT 570
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 5 FGTRITYKRSGTNDTLHSIIEDHTANSHVLANLEEWSVYEIRMTAINEVGTS 160
F T + Y +H +I+ +++H LA + S+Y E+G S
Sbjct: 231 FNTDVQYNFIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNGSGELGLS 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,886
Number of Sequences: 5004
Number of extensions: 46040
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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