Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526...    29   3.0  
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    28   4.0  
12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977     27   6.9  
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430...    27   6.9  
08_02_1629 + 28370720-28370992,28371183-28371287                       27   6.9  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    27   6.9  
03_01_0553 - 4123634-4123690,4123756-4124469                           27   6.9  
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959...    27   9.1  
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    27   9.1  

>08_01_1013 +
           10251463-10251858,10252366-10252434,10252545-10252652,
           10253261-10253326,10254258-10254395,10255047-10255094,
           10256292-10256398,10257228-10257302,10258317-10258368,
           10258485-10259068,10259944-10260150,10260236-10260407
          Length = 673

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 110 WSVYEIRMTAINEVGTSAESPTAFERTREAVPSRGP 217
           WSV E  M    E  ++ E+      T+  +PS+GP
Sbjct: 479 WSVRETTMRESQETSSNTEARKTKNTTKSNIPSKGP 514


>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
            3384640-3384709,3385878-3386002,3387128-3387268,
            3387362-3387519,3387644-3387803,3390136-3390213,
            3390326-3390385,3390473-3390528,3391886-3392090,
            3394107-3394192,3394296-3394406,3394536-3394607,
            3395453-3395538,3395730-3395878,3396107-3396250,
            3396335-3396442,3396997-3397027,3397609-3397713,
            3398283-3398407,3398807-3398950,3399073-3399177,
            3400748-3400799,3401549-3401696,3401936-3402130,
            3402404-3402647,3403152-3403259,3403887-3404034,
            3405467-3405525,3405876-3405945,3407008-3407333,
            3407666-3409204,3410526-3410733,3410870-3410906,
            3411024-3411072,3411143-3411271
          Length = 2025

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +2

Query: 44   DTLHSIIEDHTANSHVLANLEEWSVYEIRMTA--INEVGTSAESPTAFERTREAVPSRGP 217
            D++ ++ E  +     L  + E   YE+ +    + E  TS  +P   +  +E   +  P
Sbjct: 1042 DSVETVDEKKSLRYCCLGTIFEIMSYELFLQGKLLTETKTSDPAPVGSKEQKEPSVAPCP 1101

Query: 218  SDVSANATSSTTVVVLWGDISAQD-QNGLIEGYKV 319
            SD+      STT+  L   +S+   QN L+   KV
Sbjct: 1102 SDIVLKWFDSTTMEDLVNHLSSNGYQNDLLHRAKV 1136


>12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977
          Length = 359

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 77  ANSHVLANLEEW----SVYEIRMTAINEVGTSAESPTAFERTREAVPSRGPS 220
           A +HVL N +E+     V ++ + +I    +SA +P+     R  +PSR PS
Sbjct: 268 AITHVLHNKQEFPLAAGVDDLLVVSIGSGSSSAATPSTAAGWRTPLPSRSPS 319


>10_02_0023 +
           4306350-4306908,4308429-4308814,4308917-4308991,
           4309330-4309539,4309649-4309961,4310035-4310130,
           4310220-4310357,4310436-4310536,4310645-4310712,
           4310800-4310849,4311790-4311848,4312399-4312530
          Length = 728

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 143 NEVGTSAESPTAFERTREAVPSRGPSDVSANATSSTTVVVLWGD 274
           +E     E P       E  P+ GP DV+A A  S  V +  GD
Sbjct: 59  DEAEEPEEDPEEVGEGAEEAPAAGPGDVAAAAAESGPVAMEAGD 102


>08_02_1629 + 28370720-28370992,28371183-28371287
          Length = 125

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 57  ALSKITRPIHMS*PIWRSGRSTKYV*LQ*TKWALQPKVLRLLRGPGKL 200
           A S ++ P   + P W S  S     L  + WA +P+  R LR P ++
Sbjct: 5   AASSVSLPGARALPTWSSSVSGDSHSLALSSWAARPRSARPLRAPARM 52


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 364 DRMSSNTLQSDAHGHTDRAQEICGVPDTGA-RLHEAGRRSPER 489
           + +  NT+  DA   +  +  +C V D G  R++EA +++P +
Sbjct: 284 EELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAK 326


>03_01_0553 - 4123634-4123690,4123756-4124469
          Length = 256

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 DRAQEICGVPDTGARLHEAGRRSPERPPGYCKDF 513
           +RA E   +P+T   L    RRS  RPP +  DF
Sbjct: 198 ERAVEESLLPETADGLRRLVRRSMHRPPPWMPDF 231


>05_07_0163 -
           28094574-28094726,28095248-28095382,28095771-28095923,
           28096010-28096208,28096312-28096349,28096849-28097020,
           28097666-28097788,28097869-28098284
          Length = 462

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 320 CYAAVTPPPRPEHKKIECQAIPSNQT 397
           C+ + +PPPRP H  I+  A  ++++
Sbjct: 11  CFLSPSPPPRPRHHSIKHLACAASRS 36


>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 248 TTVVVLWGDISAQDQNGLIEGYK--VCYAAVTPP-PRPEHKKIECQAIPSNQTHTVTL 412
           TT   +  D+ +++   ++E +K  V Y    PP P PE ++ E  ++ S+  H V +
Sbjct: 306 TTQKDIHSDMFSKEAGKVVEEFKLRVVYIPANPPSPVPEEEEDEIDSLDSDVDHEVQM 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,041
Number of Sequences: 37544
Number of extensions: 380966
Number of successful extensions: 1307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)