Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    33   0.15 
At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transfera...    29   1.4  
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri...    28   3.3  
At5g28600.1 68418.m03490 hypothetical protein                          28   4.4  
At3g05380.1 68416.m00588 myb family transcription factor contain...    28   4.4  

>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 115 GLRNTYDCNKRSGHFSRKSYGF*EDQGSCAITRPERRISE 234
           GLR T DC    GHF  K  G  +D+G   +  P   +S+
Sbjct: 50  GLRVTIDCKVNKGHFVTKGSGNIDDKGKFGLNIPHDIVSD 89


>At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 308 GYKVCYAAVTPPPRPEHKKIECQAIPSNQTHTVTLTELRKYVVYQIQVLG 457
           G + C    T P   E  ++   ++  NQT  +   ELRK  +  IQ  G
Sbjct: 404 GVRACEGPDTVPDPDELARVFADSVTGNQTERIKAVELRKAALDAIQERG 453


>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
           repeat family protein contains Pfam profiles: PF00023
           ankyrin repeat, PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 481

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 210 EARATYQRTPLHRLRWWSCGATSLHKIKTV 299
           EA+A+   TPLH   W+S  A  +  +KT+
Sbjct: 114 EAKASNGMTPLHLAVWYSITAKEISTVKTL 143


>At5g28600.1 68418.m03490 hypothetical protein
          Length = 711

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 122 EIRMTAINEVGTSAESPTAFERTREAVPS-----RGPSDVSANATSSTTVVVLWGDISAQ 286
           + ++ A  +   SA+  + F R +E VP+       P D+ +NAT    V+ +  DI ++
Sbjct: 298 DAKLEAHGKAIISADPDSGFNRPKETVPTGNVSASNPGDLGSNATKREEVIPMDEDIRSE 357


>At3g05380.1 68416.m00588 myb family transcription factor contains
           Pfam profile:PF00249 Myb-like DNA-binding domain
          Length = 1055

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 328 GRDAAAAPRTQEDRMSSNTLQSDAHGHTDRAQEICGVPD 444
           G DA+  PR Q+ R  +   +SD+    D  Q I G PD
Sbjct: 123 GHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSI-GSPD 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,111
Number of Sequences: 28952
Number of extensions: 264909
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)