Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B06f
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 101 2e-22
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 101 3e-22
07_03_0078 - 13147741-13148913 30 0.58
09_01_0024 + 438288-438542,439020-439069,440096-440351 29 1.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 2.3
03_06_0682 - 35516081-35518303 28 3.1
11_02_0038 - 7631462-7634428,7635975-7636250 27 4.1
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 26 9.4
04_01_0016 - 249026-249049,250193-250606 26 9.4
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 101 bits (242), Expect = 2e-22
Identities = 55/100 (55%), Positives = 66/100 (66%)
Frame = +3
Query: 15 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 194
VG+ KGH TK + + RP+ KG TK FVR L+REVVG A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRIT 61
Query: 195 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 314
ELLKV KDKRALK KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 101 bits (241), Expect = 3e-22
Identities = 55/100 (55%), Positives = 66/100 (66%)
Frame = +3
Query: 15 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 194
VG+ KGH TK + + RP+ KG TK FVR+L+REV G A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRIT 61
Query: 195 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 314
ELLKV KDKRALK KR+LGTH RAK+KREE++ VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 100 AGLILMALSVIPLRPADILVVLWPF 26
AGL+ AL VIP P + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 171 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 296
A++E R E LK ++++ A K LKR+ + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = +3
Query: 78 KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 257
+A + + A L+ + S+ ++LV E +G EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 258 HIRAKRKREELSNVLA 305
+R + + S VLA
Sbjct: 698 E---ERLQSQESKVLA 710
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 96 PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 263
P + L+ + F+++++ +++ EKR ELL+ ++K LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383
Query: 264 RAKRKREELSNVL 302
R K ++E +L
Sbjct: 384 RTKTTKKEWEAIL 396
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 216 DKRALKFLKRRLGTHIRAKRKREELSNV 299
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 216 DKRALKFLKRRLGTHIRAKRKREELSNVL 302
DK L K +G + +R+RE+LSN+L
Sbjct: 498 DKVLLNVRKLYIGLSMSKRRQREQLSNIL 526
>04_01_0016 - 249026-249049,250193-250606
Length = 145
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 359 IYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGADVC 255
I HL VM ++ GC+P V K LPL C
Sbjct: 53 ITHL-VMCTTVSGCMPGADFEVVKLLGLPLTTKRC 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,562
Number of Sequences: 37544
Number of extensions: 163463
Number of successful extensions: 414
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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