Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B06f
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)             122   1e-28
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.77 
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.0  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   2.3  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   4.1  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    27   4.1  
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)                 27   5.4  
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   27   7.2  
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   7.2  
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)                   26   9.5  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   9.5  
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           26   9.5  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   9.5  
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)                       26   9.5  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score =  122 bits (293), Expect = 1e-28
 Identities = 62/103 (60%), Positives = 75/103 (72%)
 Frame = +3

Query: 9   IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 188
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 189 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
            MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51  VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
 Frame = +3

Query: 15   VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 158
            V  RKGHK T     +   G+KGI  K  R+  +R    Q     KHS   K +R  +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168

Query: 159  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 299
             + H+       E  KV K K+ ++F K + G  ++   + E+   V
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKV 1212


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 108 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 221
           +GL+    K  + ++ E  GHA Y+K    L KVS+++
Sbjct: 32  RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 108 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 287
           +GL+    K  R ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   
Sbjct: 88  RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145

Query: 288 L 290
           L
Sbjct: 146 L 146



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 108 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 281
           +GL+    +  + ++ E  GH  Y+K    L KVS+ K A + L    G +   K  R
Sbjct: 60  RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 147 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 299
           ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   L  V
Sbjct: 17  ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 210 SKDKRALKFLKRRLGTHIRAKRKREELSN 296
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 93  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 224
           RP +L+ ++   + +VR L   + G  +Y +    L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 252 PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 130
           P     +S  A L+     P PS ++   R+ R  NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812


>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 153 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 287
           RE+    + + +  E++K+ K K++ K +K++     + K+K+EE
Sbjct: 3   REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47


>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
          Length = 922

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 72  TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 230
           TDK +++ PA+++ +    S   +  V+ ++G AQY  K   +L  ++K  R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105 LKGLQTKHSKFVRDLVREVVGHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 272
           LK  + K +  +R++++      + +K+ A  L K  + K ALK  K+RL T IRA+
Sbjct: 308 LKQTKKKLATPLREVIKSKPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364


>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 72  TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 230
           TDK +++ PA+++ +    S   +  V+ ++G AQY  K   +L  ++K  R L
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 671


>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
          Length = 740

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 309 SERARC*VLHASSWRGCVCPIVASRTSEHACLLT 208
           S   +C     S+W GC     AS T+ ++C LT
Sbjct: 233 STDTKCAKRCGSAWTGCAALSGASLTTSYSCALT 266


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 109 FSLAGLILMALSVIPLRPADILVVLWPFRRPTAIS 5
           FS A    + L+V+ +  + I+V LW  +RP A S
Sbjct: 211 FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFS 245


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 147  LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 278
            L R V+    Y+    +   + + ++ ++FL +RL   ++ KRK
Sbjct: 1235 LTRNVIYRNPYQPITYDYRTIGEQRQRVRFLAKRLSKILKRKRK 1278


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 109  FSLAGLILMALSVIPLRPADILVVLWPFRRPTAIS 5
            FS A    + L+V+ +  + I+V LW  +RP A S
Sbjct: 954  FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFS 988


>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
          Length = 671

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 309 SERARC*VLHASSWRGCVCPIVASRTSEHACLLT 208
           S   +C     S+W GC     AS T+ ++C LT
Sbjct: 153 STDTKCAKRCGSAWTGCAALSGASLTTSYSCALT 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,620,560
Number of Sequences: 59808
Number of extensions: 195898
Number of successful extensions: 571
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)