BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B06f (392 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 131 9e-31 BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31 BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31 BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31 AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31 AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 64 2e-10 U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 4.1 CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 4.1 BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 4.1 BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 4.1 AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 4.1 AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 4.1 L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein. 29 7.2 BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sortin... 29 7.2 AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sortin... 29 7.2 AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation ... 29 7.2 AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial translati... 29 7.2 AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sortin... 29 7.2 AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein. 29 7.2 BC008573-1|AAH08573.1| 48|Homo sapiens HIG2 protein protein. 28 9.5 >CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. Length = 105 Score = 131 bits (316), Expect = 9e-31 Identities = 68/105 (64%), Positives = 80/105 (76%) Frame = +3 Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182 + +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54 Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317 +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99 >BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 protein. Length = 105 Score = 131 bits (316), Expect = 9e-31 Identities = 68/105 (64%), Positives = 80/105 (76%) Frame = +3 Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182 + +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54 Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317 +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99 >BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 protein. Length = 105 Score = 131 bits (316), Expect = 9e-31 Identities = 68/105 (64%), Positives = 80/105 (76%) Frame = +3 Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182 + +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54 Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317 +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99 >BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 protein. Length = 105 Score = 131 bits (316), Expect = 9e-31 Identities = 68/105 (64%), Positives = 80/105 (76%) Frame = +3 Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182 + +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54 Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317 +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99 >AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 protein. Length = 105 Score = 131 bits (316), Expect = 9e-31 Identities = 68/105 (64%), Positives = 80/105 (76%) Frame = +3 Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182 + +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54 Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317 +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99 >AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 protein. Length = 32 Score = 63.7 bits (148), Expect = 2e-10 Identities = 29/32 (90%), Positives = 32/32 (100%) Frame = +3 Query: 201 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 296 LKVSKDKRALKF+K+R+GTHIRAKRKREELSN Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32 >U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8 protein. Length = 400 Score = 29.5 bits (63), Expect = 4.1 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197 +I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303 >CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. Length = 405 Score = 29.5 bits (63), Expect = 4.1 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197 +I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308 >BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein protein. Length = 400 Score = 29.5 bits (63), Expect = 4.1 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197 +I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303 >BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8 protein. Length = 405 Score = 29.5 bits (63), Expect = 4.1 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197 +I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308 >AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8 protein. Length = 405 Score = 29.5 bits (63), Expect = 4.1 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197 +I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308 >AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8 variant protein. Length = 481 Score = 29.5 bits (63), Expect = 4.1 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197 +I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343 >L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein. Length = 727 Score = 28.7 bits (61), Expect = 7.2 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +3 Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302 K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516 Query: 303 AQMRK 317 + + K Sbjct: 517 SVIIK 521 >BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sorting 11 homolog (S. cerevisiae) protein. Length = 941 Score = 28.7 bits (61), Expect = 7.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298 F FF ++LV L+ DG PG P+S A Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39 >AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sorting 11 (yeast homolog) variant protein. Length = 941 Score = 28.7 bits (61), Expect = 7.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298 F FF ++LV L+ DG PG P+S A Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39 >AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation factor 2 protein. Length = 727 Score = 28.7 bits (61), Expect = 7.2 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +3 Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302 K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516 Query: 303 AQMRK 317 + + K Sbjct: 517 SVIIK 521 >AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial translation-initiation factor 2 protein. Length = 727 Score = 28.7 bits (61), Expect = 7.2 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +3 Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302 K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516 Query: 303 AQMRK 317 + + K Sbjct: 517 SVIIK 521 >AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sorting protein 11 protein. Length = 941 Score = 28.7 bits (61), Expect = 7.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298 F FF ++LV L+ DG PG P+S A Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39 >AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein. Length = 941 Score = 28.7 bits (61), Expect = 7.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298 F FF ++LV L+ DG PG P+S A Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39 >BC008573-1|AAH08573.1| 48|Homo sapiens HIG2 protein protein. Length = 48 Score = 28.3 bits (60), Expect = 9.5 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +3 Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 296 +R+ + VS+D+ A+ L H++ K+KR+ L N Sbjct: 8 RRSFAFVAVSRDRTAVPSLGHSARLHLKKKKKRKSLFN 45 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 48,304,576 Number of Sequences: 237096 Number of extensions: 847230 Number of successful extensions: 1890 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1885 length of database: 76,859,062 effective HSP length: 82 effective length of database: 57,417,190 effective search space used: 2756025120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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