Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B06f
(392 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 131 9e-31
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 131 9e-31
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 64 2e-10
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 4.1
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 4.1
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 4.1
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 4.1
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 4.1
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 4.1
L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein. 29 7.2
BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sortin... 29 7.2
AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sortin... 29 7.2
AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation ... 29 7.2
AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial translati... 29 7.2
AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sortin... 29 7.2
AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein. 29 7.2
BC008573-1|AAH08573.1| 48|Homo sapiens HIG2 protein protein. 28 9.5
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 131 bits (316), Expect = 9e-31
Identities = 68/105 (64%), Positives = 80/105 (76%)
Frame = +3
Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE
Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54
Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 131 bits (316), Expect = 9e-31
Identities = 68/105 (64%), Positives = 80/105 (76%)
Frame = +3
Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE
Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54
Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 131 bits (316), Expect = 9e-31
Identities = 68/105 (64%), Positives = 80/105 (76%)
Frame = +3
Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE
Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54
Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 131 bits (316), Expect = 9e-31
Identities = 68/105 (64%), Positives = 80/105 (76%)
Frame = +3
Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE
Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54
Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 131 bits (316), Expect = 9e-31
Identities = 68/105 (64%), Positives = 80/105 (76%)
Frame = +3
Query: 3 FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G A YE
Sbjct: 5 YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54
Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55 RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +3
Query: 201 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 296
LKVSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 45 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
>L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 303 AQMRK 317
+ + K
Sbjct: 517 SVIIK 521
>BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sorting
11 homolog (S. cerevisiae) protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
>AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sorting
11 (yeast homolog) variant protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
>AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation
factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 303 AQMRK 317
+ + K
Sbjct: 517 SVIIK 521
>AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial
translation-initiation factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 303 AQMRK 317
+ + K
Sbjct: 517 SVIIK 521
>AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sorting
protein 11 protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
>AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
>BC008573-1|AAH08573.1| 48|Homo sapiens HIG2 protein protein.
Length = 48
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 296
+R+ + VS+D+ A+ L H++ K+KR+ L N
Sbjct: 8 RRSFAFVAVSRDRTAVPSLGHSARLHLKKKKKRKSLFN 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,304,576
Number of Sequences: 237096
Number of extensions: 847230
Number of successful extensions: 1890
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -