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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B06f
         (392 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               131   9e-31
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   131   9e-31
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   131   9e-31
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   131   9e-31
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   131   9e-31
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    64   2e-10
U93871-1|AAB68767.1|  400|Homo sapiens RaP2 interacting protein ...    29   4.1  
CR456748-1|CAG33029.1|  405|Homo sapiens RPIP8 protein.                29   4.1  
BX537443-1|CAD97685.1|  400|Homo sapiens hypothetical protein pr...    29   4.1  
BC006194-1|AAH06194.1|  405|Homo sapiens RaP2 interacting protei...    29   4.1  
AF055026-1|AAC09366.1|  405|Homo sapiens RaP2 interacting protei...    29   4.1  
AB209802-1|BAD93039.1|  481|Homo sapiens RaP2 interacting protei...    29   4.1  
L34600-1|AAA67038.1|  727|Homo sapiens initiation factor 2 protein.    29   7.2  
BC065563-1|AAH65563.1|  941|Homo sapiens vacuolar protein sortin...    29   7.2  
AK223158-1|BAD96878.1|  941|Homo sapiens vacuolar protein sortin...    29   7.2  
AF495546-1|AAM70196.1|  727|Homo sapiens translation initiation ...    29   7.2  
AF494407-1|AAM14617.1|  727|Homo sapiens mitochondrial translati...    29   7.2  
AF308800-1|AAG34677.1|  941|Homo sapiens vacuolar protein sortin...    29   7.2  
AB027508-1|BAA95163.2|  941|Homo sapiens hVPS11 protein.               29   7.2  
BC008573-1|AAH08573.1|   48|Homo sapiens HIG2 protein protein.         28   9.5  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  131 bits (316), Expect = 9e-31
 Identities = 68/105 (64%), Positives = 80/105 (76%)
 Frame = +3

Query: 3   FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
           + +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A YE
Sbjct: 5   YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54

Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
           +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  131 bits (316), Expect = 9e-31
 Identities = 68/105 (64%), Positives = 80/105 (76%)
 Frame = +3

Query: 3   FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
           + +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A YE
Sbjct: 5   YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54

Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
           +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  131 bits (316), Expect = 9e-31
 Identities = 68/105 (64%), Positives = 80/105 (76%)
 Frame = +3

Query: 3   FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
           + +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A YE
Sbjct: 5   YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54

Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
           +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  131 bits (316), Expect = 9e-31
 Identities = 68/105 (64%), Positives = 80/105 (76%)
 Frame = +3

Query: 3   FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
           + +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A YE
Sbjct: 5   YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54

Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
           +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  131 bits (316), Expect = 9e-31
 Identities = 68/105 (64%), Positives = 80/105 (76%)
 Frame = +3

Query: 3   FEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYE 182
           + +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A YE
Sbjct: 5   YPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYE 54

Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 317
           +RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 55  RRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +3

Query: 201 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 296
           LKVSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


>U93871-1|AAB68767.1|  400|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 45  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303


>CR456748-1|CAG33029.1|  405|Homo sapiens RPIP8 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 45  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>BX537443-1|CAD97685.1|  400|Homo sapiens hypothetical protein
           protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 45  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303


>BC006194-1|AAH06194.1|  405|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 45  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>AF055026-1|AAC09366.1|  405|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 45  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>AB209802-1|BAD93039.1|  481|Homo sapiens RaP2 interacting protein 8
           variant protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 45  KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 197
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343


>L34600-1|AAA67038.1|  727|Homo sapiens initiation factor 2 protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +3

Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302
           K  K      RE  GH  ++KR++           L+FL+R+    ++ K KRE  SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516

Query: 303 AQMRK 317
           + + K
Sbjct: 517 SVIIK 521


>BC065563-1|AAH65563.1|  941|Homo sapiens vacuolar protein sorting
           11 homolog (S. cerevisiae) protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
           F FF ++LV   L+ DG  PG  P+S   A
Sbjct: 10  FVFFDKELVKEPLSNDGAAPGATPASGSAA 39


>AK223158-1|BAD96878.1|  941|Homo sapiens vacuolar protein sorting
           11 (yeast homolog) variant protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
           F FF ++LV   L+ DG  PG  P+S   A
Sbjct: 10  FVFFDKELVKEPLSNDGAAPGATPASGSAA 39


>AF495546-1|AAM70196.1|  727|Homo sapiens translation initiation
           factor 2 protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +3

Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302
           K  K      RE  GH  ++KR++           L+FL+R+    ++ K KRE  SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516

Query: 303 AQMRK 317
           + + K
Sbjct: 517 SVIIK 521


>AF494407-1|AAM14617.1|  727|Homo sapiens mitochondrial
           translation-initiation factor 2 protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +3

Query: 123 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 302
           K  K      RE  GH  ++KR++           L+FL+R+    ++ K KRE  SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516

Query: 303 AQMRK 317
           + + K
Sbjct: 517 SVIIK 521


>AF308800-1|AAG34677.1|  941|Homo sapiens vacuolar protein sorting
           protein 11 protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
           F FF ++LV   L+ DG  PG  P+S   A
Sbjct: 10  FVFFDKELVKEPLSNDGAAPGATPASGSAA 39


>AB027508-1|BAA95163.2|  941|Homo sapiens hVPS11 protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 387 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 298
           F FF ++LV   L+ DG  PG  P+S   A
Sbjct: 10  FVFFDKELVKEPLSNDGAAPGATPASGSAA 39


>BC008573-1|AAH08573.1|   48|Homo sapiens HIG2 protein protein.
          Length = 48

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 183 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 296
           +R+   + VS+D+ A+  L      H++ K+KR+ L N
Sbjct: 8   RRSFAFVAVSRDRTAVPSLGHSARLHLKKKKKRKSLFN 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,304,576
Number of Sequences: 237096
Number of extensions: 847230
Number of successful extensions: 1890
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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