Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 126 3e-30
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 52 4e-08
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 52 5e-08
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 28 0.73
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 27 2.2
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 6.8
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 22 8.8
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 9.0
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 9.0
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 126 bits (303), Expect = 3e-30
Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Frame = +1
Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
MR+ TCYFCS VYPGHGI FVRND K+FRFCRSKCH F AYRK G
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60
Query: 205 KELSIDPSFEF-EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVE 381
KE+ D + RRNVP++Y+R + T+ AMK+V ++ +R + +RL R E
Sbjct: 61 KEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQE 120
Query: 382 WQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIE 504
Q + + +++ P ++ + E + E T+E
Sbjct: 121 LQEAQKLIAQNVPQFTEPEGEVETAEVQEPQIVSDEEYTME 161
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 52.4 bits (120), Expect = 4e-08
Identities = 38/142 (26%), Positives = 63/142 (44%)
Frame = +1
Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
M++E C F S+VYPG G FVR D K+FRF K + F YR+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 205 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384
K +S + + +KR +K+ R + ++ +K E R +R R ++ +
Sbjct: 61 KGISEEHA---KKRTRRTVKHQRGIVGANLDVIK---EKRNQRPEVRAAARAAALKQRKD 114
Query: 385 QRDVREVQRDISLIKSPAAGLK 450
+R E ++ KS A+ +
Sbjct: 115 KRAASESEKKAIKAKSAASSAR 136
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 52.0 bits (119), Expect = 5e-08
Identities = 29/95 (30%), Positives = 46/95 (48%)
Frame = +1
Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
M++E C F S+VYPG G FVR D K+FRF K + F YR+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 205 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKK 309
K +S + + +KR +K+ R + ++ +K+
Sbjct: 61 KGISEEHA---KKRTRRTVKHQRGIVGANLDVIKE 92
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 0.73
Identities = 19/91 (20%), Positives = 42/91 (46%)
Frame = +1
Query: 235 FEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRD 414
F + P K +E + I+A K + N++++QR R+ R E + + +
Sbjct: 87 FPSTQQQPPKTEKEKEKEPIQAKHK-----KNVENDFLLQRFRKVRIAEKKDSEQPSSHE 141
Query: 415 ISLIKSPAAGLKQRQALEATEMEVEPETIEV 507
I L Q+Q +E+ +++ P+ +++
Sbjct: 142 IHLTDDDDKTTLQKQMVESDQLKKNPQEVKL 172
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 35 KHVISVHPGFILDTESNLSGMTAKFSD---SVVQNATQRLK 148
KH++ V F L +E LS AKF + ++ A QRL+
Sbjct: 39 KHILKVQRHFNLISEDELSARQAKFEEIVKPILSKAFQRLE 79
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = -3
Query: 390 SLPLYLSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQF 274
S+P + + NI++ L ++++ + C SP F
Sbjct: 43 SIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHF 81
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 313 EEIRQRRSNNYIMQRLRQGREVEWQR 390
+ IR+ +SN+ ++QRL QG E + R
Sbjct: 168 QSIRKAKSNSGLIQRLLQGTEQDKAR 193
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 21.8 bits (44), Expect(2) = 8.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 183 FSPFSFTGILLLFKR 139
F+ FSF G+LL K+
Sbjct: 190 FAAFSFLGLLLFIKK 204
Score = 21.0 bits (42), Expect(2) = 8.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 297 FDCFSPQFAIVFQGHISSLF 238
F CFSP + G+ SLF
Sbjct: 171 FYCFSPSGIYMSVGYTESLF 190
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 222 VYRQFLTRSLTVSFSPFSFTGILLLFKRCV 133
V+ L + L + PF FT ILL F C+
Sbjct: 765 VFHPQLLQQLLLRNQPFLFTNILLRFYLCL 794
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 83 NLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLK 184
N MT V+ +KRR+ P +NG++
Sbjct: 585 NARAMTVSTPQLPVEYVINGIKRRKFPTSVNGMR 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,784
Number of Sequences: 5004
Number of extensions: 38449
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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