Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 48 5e-06
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015) 29 2.3
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 3.1
SB_56732| Best HMM Match : rve (HMM E-Value=0.0016) 28 4.1
SB_39511| Best HMM Match : rve (HMM E-Value=0.0016) 28 4.1
SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6) 28 4.1
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12) 28 5.4
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43) 27 7.1
SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27) 27 7.1
SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2) 27 7.1
SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21) 27 7.1
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17) 27 9.4
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 27 9.4
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 27 9.4
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/41 (68%), Positives = 37/41 (90%)
Frame = +1
Query: 184 AYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMK 306
A+RK AGK+L+ID +FEFEK+RNVP+KYNRELW+ T E++K
Sbjct: 13 AFRKAAGKDLAIDSTFEFEKKRNVPVKYNRELWSNT-ESLK 52
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +1
Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
M++E C + ++YPGHG ++VR D K+F F +C A YR+
Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60
Query: 205 KELSIDPSFEFEKRRNVPLKYNREL 279
K + S +KR +K+ R +
Sbjct: 61 KGTQEEVS---KKRTRRNIKFQRSV 82
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 298 AMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459
AMKK++E R+ +++ + E +++RE +RD +K+ L Q +
Sbjct: 1386 AMKKLQEARESEGKELVLRTEEIEKLYERNKELREKERDYEELKTKMRDLSQTE 1439
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = +1
Query: 205 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384
+E+ P EFE R+ L+ RE E +KKV+++ N I QR + RE +
Sbjct: 2176 QEVESAPPQEFETWRDDTLEKEREEAMSYDERIKKVQKL---DVNKIIQQRQEEERESQR 2232
Query: 385 QRDVREVQR---DISLIKSPAAGLKQRQALEATEMEVEPETIE 504
+ + E QR + + ++ L++R+A E + E E E
Sbjct: 2233 KARLLEEQRLLEERAEMERAKRELEERKAARYHEPQEEEEDEE 2275
>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
Length = 858
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 149 FLNAAWHFERQNLKILQSFRTNWI 78
+L + WHFER NL ++ ++WI
Sbjct: 511 YLRSIWHFERLNLWLILILGSSWI 534
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 40 CYFCSSRVYPGHGIQFVRNDCKIFRF--CRSKCHA 138
C FC+S+VYP +F +C ++ C + H+
Sbjct: 410 CNFCASKVYPPKPARFFCTECAVYSCGNCSDEIHS 444
>SB_56732| Best HMM Match : rve (HMM E-Value=0.0016)
Length = 236
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+
Sbjct: 82 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGGKKTGVKPKKAKK 141
Query: 393 RARSPERHLFDKV 431
R P+ H+ DKV
Sbjct: 142 RP-LPKFHVGDKV 153
>SB_39511| Best HMM Match : rve (HMM E-Value=0.0016)
Length = 850
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+
Sbjct: 82 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGGKKTGVKPKKAKK 141
Query: 393 RARSPERHLFDKV 431
R P+ H+ DKV
Sbjct: 142 RP-LPKFHVGDKV 153
>SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)
Length = 351
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 223 PSFEFEKR-RNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVR 399
PS EK R + E W + E + + E +R+RR + + +V W+ ++
Sbjct: 264 PSTRAEKEARRSKRRLQLEQWKRREERLARSERLRRRRDPTSYSITIEKSTKVHWRTEID 323
Query: 400 EV 405
++
Sbjct: 324 DI 325
>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
Length = 709
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 11 LKPIKCV*KHVISVHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLT 190
++P+K +H+ H F+ + L G+T KF D + + +R IP L+ +
Sbjct: 264 VRPLK---EHISCAHKCFVFQILAKLRGITRKFVDYAEKAKLRASAQRVIPEALSAVSKA 320
Query: 191 V 193
V
Sbjct: 321 V 321
>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
Length = 1803
Score = 27.5 bits (58), Expect = 7.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+
Sbjct: 656 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGDKKTGVKPKKAKK 715
Query: 393 RARSPERHLFDKV 431
R P+ H+ DKV
Sbjct: 716 RP-LPKFHVGDKV 727
>SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)
Length = 510
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 92 GMTAKFSDSVVQNATQRLKRRRIPVKLNGLKL--TVRLRVRNCL*THPLSLKR 244
G A+ + ++N L R+RI LNG+K+ +RL +N P+ KR
Sbjct: 139 GEGARKLNPTIRNIYAGLSRKRIEETLNGMKVPNEIRLLFQNKAPLRPIKAKR 191
>SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)
Length = 172
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/69 (27%), Positives = 39/69 (56%)
Frame = +1
Query: 280 WTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459
W K+ ++K +E + R+ +QR RE+E+ R +E++R +I+ +K+R+
Sbjct: 97 WLKS--SVKLLESALRERNKQMDIQR----REIEFLR--KELRRKDEVIREYENIIKERE 148
Query: 460 ALEATEMEV 486
+E E+E+
Sbjct: 149 DMEKRELEI 157
>SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)
Length = 889
Score = 27.5 bits (58), Expect = 7.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+
Sbjct: 458 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGDKKTGVKPKKAKK 517
Query: 393 RARSPERHLFDKV 431
R P+ H+ DKV
Sbjct: 518 RP-LPKFHVGDKV 529
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 226 SFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQR 357
+FE + R + + ++EL + MK+ E RQ++SN +I Q+
Sbjct: 508 TFEIKDRMSQS-RASKELIERRRRKMKEFEGYRQKKSNEFIQQK 550
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
S++ K +V+QN T RL PV +G+K RL V++C
Sbjct: 854 SSIGTAGIKAITNVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 897
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
S++ K V+QN T RL PV +G+K RL V++C
Sbjct: 2140 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 2183
>SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17)
Length = 641
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
S++ K V+QN T RL PV +G+K RL V++C
Sbjct: 447 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 490
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
S++ K V+QN T RL PV +G+K RL V++C
Sbjct: 963 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 1006
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 402 FSHVSLPLYLSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGW 223
F+H+ P+ L+ L + +PS F + +CFS ++ SSL K GW
Sbjct: 1071 FTHIVQPISLTVLPALRGGFLFSPSCPKDVTFGNFSECFSSAWSFSVN---SSLIKEGGW 1127
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 238 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVE 381
++R + K E+W++ E KK E + R I RQ +EVE
Sbjct: 145 KEREELKGKLRAEVWSEAKEEAKKDSEREKVRLEQEIFDLRRQRKEVE 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,284
Number of Sequences: 59808
Number of extensions: 279405
Number of successful extensions: 886
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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