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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   3e-11
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)        48   5e-06
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)              29   2.3  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   3.1  
SB_56732| Best HMM Match : rve (HMM E-Value=0.0016)                    28   4.1  
SB_39511| Best HMM Match : rve (HMM E-Value=0.0016)                    28   4.1  
SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)                  28   4.1  
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)                   28   5.4  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               27   7.1  
SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)                   27   7.1  
SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)            27   7.1  
SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)                   27   7.1  
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17)             27   9.4  
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      27   9.4  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     27   9.4  

>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 28/41 (68%), Positives = 37/41 (90%)
 Frame = +1

Query: 184 AYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMK 306
           A+RK AGK+L+ID +FEFEK+RNVP+KYNRELW+ T E++K
Sbjct: 13  AFRKAAGKDLAIDSTFEFEKKRNVPVKYNRELWSNT-ESLK 52


>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = +1

Query: 25  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
           M++E C +   ++YPGHG ++VR D K+F F   +C  A               YR+   
Sbjct: 1   MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60

Query: 205 KELSIDPSFEFEKRRNVPLKYNREL 279
           K    + S   +KR    +K+ R +
Sbjct: 61  KGTQEEVS---KKRTRRNIKFQRSV 82


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 298  AMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459
            AMKK++E R+      +++     +  E  +++RE +RD   +K+    L Q +
Sbjct: 1386 AMKKLQEARESEGKELVLRTEEIEKLYERNKELREKERDYEELKTKMRDLSQTE 1439


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
 Frame = +1

Query: 205  KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384
            +E+   P  EFE  R+  L+  RE      E +KKV+++     N  I QR  + RE + 
Sbjct: 2176 QEVESAPPQEFETWRDDTLEKEREEAMSYDERIKKVQKL---DVNKIIQQRQEEERESQR 2232

Query: 385  QRDVREVQR---DISLIKSPAAGLKQRQALEATEMEVEPETIE 504
            +  + E QR   + + ++     L++R+A    E + E E  E
Sbjct: 2233 KARLLEEQRLLEERAEMERAKRELEERKAARYHEPQEEEEDEE 2275


>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
          Length = 858

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 149 FLNAAWHFERQNLKILQSFRTNWI 78
           +L + WHFER NL ++    ++WI
Sbjct: 511 YLRSIWHFERLNLWLILILGSSWI 534


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 40  CYFCSSRVYPGHGIQFVRNDCKIFRF--CRSKCHA 138
           C FC+S+VYP    +F   +C ++    C  + H+
Sbjct: 410 CNFCASKVYPPKPARFFCTECAVYSCGNCSDEIHS 444


>SB_56732| Best HMM Match : rve (HMM E-Value=0.0016)
          Length = 236

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
 Frame = +3

Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
           KET+  +E+   +VD  N SY  S R         D  ++   + Y   +TG + + AK+
Sbjct: 82  KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGGKKTGVKPKKAKK 141

Query: 393 RARSPERHLFDKV 431
           R   P+ H+ DKV
Sbjct: 142 RP-LPKFHVGDKV 153


>SB_39511| Best HMM Match : rve (HMM E-Value=0.0016)
          Length = 850

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
 Frame = +3

Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
           KET+  +E+   +VD  N SY  S R         D  ++   + Y   +TG + + AK+
Sbjct: 82  KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGGKKTGVKPKKAKK 141

Query: 393 RARSPERHLFDKV 431
           R   P+ H+ DKV
Sbjct: 142 RP-LPKFHVGDKV 153


>SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)
          Length = 351

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 223 PSFEFEKR-RNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVR 399
           PS   EK  R    +   E W +  E + + E +R+RR        + +  +V W+ ++ 
Sbjct: 264 PSTRAEKEARRSKRRLQLEQWKRREERLARSERLRRRRDPTSYSITIEKSTKVHWRTEID 323

Query: 400 EV 405
           ++
Sbjct: 324 DI 325


>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
          Length = 709

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 11  LKPIKCV*KHVISVHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLT 190
           ++P+K   +H+   H  F+    + L G+T KF D   +   +   +R IP  L+ +   
Sbjct: 264 VRPLK---EHISCAHKCFVFQILAKLRGITRKFVDYAEKAKLRASAQRVIPEALSAVSKA 320

Query: 191 V 193
           V
Sbjct: 321 V 321


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
 Frame = +3

Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
           KET+  +E+   +VD  N SY  S R         D  ++   + Y   +TG + + AK+
Sbjct: 656 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGDKKTGVKPKKAKK 715

Query: 393 RARSPERHLFDKV 431
           R   P+ H+ DKV
Sbjct: 716 RP-LPKFHVGDKV 727


>SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)
          Length = 510

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 92  GMTAKFSDSVVQNATQRLKRRRIPVKLNGLKL--TVRLRVRNCL*THPLSLKR 244
           G  A+  +  ++N    L R+RI   LNG+K+   +RL  +N     P+  KR
Sbjct: 139 GEGARKLNPTIRNIYAGLSRKRIEETLNGMKVPNEIRLLFQNKAPLRPIKAKR 191


>SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)
          Length = 172

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/69 (27%), Positives = 39/69 (56%)
 Frame = +1

Query: 280 WTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459
           W K+  ++K +E   + R+    +QR    RE+E+ R  +E++R   +I+     +K+R+
Sbjct: 97  WLKS--SVKLLESALRERNKQMDIQR----REIEFLR--KELRRKDEVIREYENIIKERE 148

Query: 460 ALEATEMEV 486
            +E  E+E+
Sbjct: 149 DMEKRELEI 157


>SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 889

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
 Frame = +3

Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392
           KET+  +E+   +VD  N SY  S R         D  ++   + Y   +TG + + AK+
Sbjct: 458 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGDKKTGVKPKKAKK 517

Query: 393 RARSPERHLFDKV 431
           R   P+ H+ DKV
Sbjct: 518 RP-LPKFHVGDKV 529


>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 226 SFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQR 357
           +FE + R +   + ++EL  +    MK+ E  RQ++SN +I Q+
Sbjct: 508 TFEIKDRMSQS-RASKELIERRRRKMKEFEGYRQKKSNEFIQQK 550


>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 80  SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
           S++     K   +V+QN T RL     PV  +G+K   RL V++C
Sbjct: 854 SSIGTAGIKAITNVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 897


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 80   SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
            S++     K    V+QN T RL     PV  +G+K   RL V++C
Sbjct: 2140 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 2183


>SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17)
          Length = 641

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 80  SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
           S++     K    V+QN T RL     PV  +G+K   RL V++C
Sbjct: 447 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 490


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 80   SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214
            S++     K    V+QN T RL     PV  +G+K   RL V++C
Sbjct: 963  SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 1006


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 402  FSHVSLPLYLSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGW 223
            F+H+  P+ L+ L       + +PS      F +  +CFS  ++       SSL K  GW
Sbjct: 1071 FTHIVQPISLTVLPALRGGFLFSPSCPKDVTFGNFSECFSSAWSFSVN---SSLIKEGGW 1127


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 238 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVE 381
           ++R  +  K   E+W++  E  KK  E  + R    I    RQ +EVE
Sbjct: 145 KEREELKGKLRAEVWSEAKEEAKKDSEREKVRLEQEIFDLRRQRKEVE 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,284
Number of Sequences: 59808
Number of extensions: 279405
Number of successful extensions: 886
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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