BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B05f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11 SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 48 5e-06 SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015) 29 2.3 SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 3.1 SB_56732| Best HMM Match : rve (HMM E-Value=0.0016) 28 4.1 SB_39511| Best HMM Match : rve (HMM E-Value=0.0016) 28 4.1 SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6) 28 4.1 SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12) 28 5.4 SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43) 27 7.1 SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27) 27 7.1 SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2) 27 7.1 SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21) 27 7.1 SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17) 27 9.4 SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 27 9.4 SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 27 9.4 >SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 352 Score = 65.3 bits (152), Expect = 3e-11 Identities = 28/41 (68%), Positives = 37/41 (90%) Frame = +1 Query: 184 AYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMK 306 A+RK AGK+L+ID +FEFEK+RNVP+KYNRELW+ T E++K Sbjct: 13 AFRKAAGKDLAIDSTFEFEKKRNVPVKYNRELWSNT-ESLK 52 >SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) Length = 154 Score = 48.0 bits (109), Expect = 5e-06 Identities = 24/85 (28%), Positives = 39/85 (45%) Frame = +1 Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204 M++E C + ++YPGHG ++VR D K+F F +C A YR+ Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60 Query: 205 KELSIDPSFEFEKRRNVPLKYNREL 279 K + S +KR +K+ R + Sbjct: 61 KGTQEEVS---KKRTRRNIKFQRSV 82 >SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1906 Score = 29.9 bits (64), Expect = 1.3 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = +1 Query: 298 AMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459 AMKK++E R+ +++ + E +++RE +RD +K+ L Q + Sbjct: 1386 AMKKLQEARESEGKELVLRTEEIEKLYERNKELREKERDYEELKTKMRDLSQTE 1439 >SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2839 Score = 29.5 bits (63), Expect = 1.8 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Frame = +1 Query: 205 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384 +E+ P EFE R+ L+ RE E +KKV+++ N I QR + RE + Sbjct: 2176 QEVESAPPQEFETWRDDTLEKEREEAMSYDERIKKVQKL---DVNKIIQQRQEEERESQR 2232 Query: 385 QRDVREVQR---DISLIKSPAAGLKQRQALEATEMEVEPETIE 504 + + E QR + + ++ L++R+A E + E E E Sbjct: 2233 KARLLEEQRLLEERAEMERAKRELEERKAARYHEPQEEEEDEE 2275 >SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015) Length = 858 Score = 29.1 bits (62), Expect = 2.3 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -1 Query: 149 FLNAAWHFERQNLKILQSFRTNWI 78 +L + WHFER NL ++ ++WI Sbjct: 511 YLRSIWHFERLNLWLILILGSSWI 534 >SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) Length = 843 Score = 28.7 bits (61), Expect = 3.1 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +1 Query: 40 CYFCSSRVYPGHGIQFVRNDCKIFRF--CRSKCHA 138 C FC+S+VYP +F +C ++ C + H+ Sbjct: 410 CNFCASKVYPPKPARFFCTECAVYSCGNCSDEIHS 444 >SB_56732| Best HMM Match : rve (HMM E-Value=0.0016) Length = 236 Score = 28.3 bits (60), Expect = 4.1 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Frame = +3 Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392 KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+ Sbjct: 82 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGGKKTGVKPKKAKK 141 Query: 393 RARSPERHLFDKV 431 R P+ H+ DKV Sbjct: 142 RP-LPKFHVGDKV 153 >SB_39511| Best HMM Match : rve (HMM E-Value=0.0016) Length = 850 Score = 28.3 bits (60), Expect = 4.1 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Frame = +3 Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392 KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+ Sbjct: 82 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGGKKTGVKPKKAKK 141 Query: 393 RARSPERHLFDKV 431 R P+ H+ DKV Sbjct: 142 RP-LPKFHVGDKV 153 >SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6) Length = 351 Score = 28.3 bits (60), Expect = 4.1 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = +1 Query: 223 PSFEFEKR-RNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVR 399 PS EK R + E W + E + + E +R+RR + + +V W+ ++ Sbjct: 264 PSTRAEKEARRSKRRLQLEQWKRREERLARSERLRRRRDPTSYSITIEKSTKVHWRTEID 323 Query: 400 EV 405 ++ Sbjct: 324 DI 325 >SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12) Length = 709 Score = 27.9 bits (59), Expect = 5.4 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +2 Query: 11 LKPIKCV*KHVISVHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLT 190 ++P+K +H+ H F+ + L G+T KF D + + +R IP L+ + Sbjct: 264 VRPLK---EHISCAHKCFVFQILAKLRGITRKFVDYAEKAKLRASAQRVIPEALSAVSKA 320 Query: 191 V 193 V Sbjct: 321 V 321 >SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43) Length = 1803 Score = 27.5 bits (58), Expect = 7.1 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Frame = +3 Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392 KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+ Sbjct: 656 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGDKKTGVKPKKAKK 715 Query: 393 RARSPERHLFDKV 431 R P+ H+ DKV Sbjct: 716 RP-LPKFHVGDKV 727 >SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27) Length = 510 Score = 27.5 bits (58), Expect = 7.1 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +2 Query: 92 GMTAKFSDSVVQNATQRLKRRRIPVKLNGLKL--TVRLRVRNCL*THPLSLKR 244 G A+ + ++N L R+RI LNG+K+ +RL +N P+ KR Sbjct: 139 GEGARKLNPTIRNIYAGLSRKRIEETLNGMKVPNEIRLLFQNKAPLRPIKAKR 191 >SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2) Length = 172 Score = 27.5 bits (58), Expect = 7.1 Identities = 19/69 (27%), Positives = 39/69 (56%) Frame = +1 Query: 280 WTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQ 459 W K+ ++K +E + R+ +QR RE+E+ R +E++R +I+ +K+R+ Sbjct: 97 WLKS--SVKLLESALRERNKQMDIQR----REIEFLR--KELRRKDEVIREYENIIKERE 148 Query: 460 ALEATEMEV 486 +E E+E+ Sbjct: 149 DMEKRELEI 157 >SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21) Length = 889 Score = 27.5 bits (58), Expect = 7.1 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Frame = +3 Query: 240 KETKCALEIQSRIVD*NNRSYEESGR---------DQTEKE**LYYAAIETGQRGRVAKR 392 KET+ +E+ +VD N SY S R D ++ + Y +TG + + AK+ Sbjct: 458 KETRRYIELLPELVDNYNHSYHRSIRRAPADVVTYDDAQEVWGVLYGDKKTGVKPKKAKK 517 Query: 393 RARSPERHLFDKV 431 R P+ H+ DKV Sbjct: 518 RP-LPKFHVGDKV 529 >SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 591 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = +1 Query: 226 SFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQR 357 +FE + R + + ++EL + MK+ E RQ++SN +I Q+ Sbjct: 508 TFEIKDRMSQS-RASKELIERRRRKMKEFEGYRQKKSNEFIQQK 550 >SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1033 Score = 27.5 bits (58), Expect = 7.1 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214 S++ K +V+QN T RL PV +G+K RL V++C Sbjct: 854 SSIGTAGIKAITNVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 897 >SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2480 Score = 27.1 bits (57), Expect = 9.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214 S++ K V+QN T RL PV +G+K RL V++C Sbjct: 2140 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 2183 >SB_50400| Best HMM Match : Tropomodulin (HMM E-Value=0.17) Length = 641 Score = 27.1 bits (57), Expect = 9.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214 S++ K V+QN T RL PV +G+K RL V++C Sbjct: 447 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 490 >SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1264 Score = 27.1 bits (57), Expect = 9.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 80 SNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLTVRLRVRNC 214 S++ K V+QN T RL PV +G+K RL V++C Sbjct: 963 SSIGTAGIKAITKVIQNVT-RLNLSSNPVGYDGVKAIARLLVKSC 1006 >SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) Length = 1595 Score = 27.1 bits (57), Expect = 9.4 Identities = 17/60 (28%), Positives = 27/60 (45%) Frame = -3 Query: 402 FSHVSLPLYLSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGW 223 F+H+ P+ L+ L + +PS F + +CFS ++ SSL K GW Sbjct: 1071 FTHIVQPISLTVLPALRGGFLFSPSCPKDVTFGNFSECFSSAWSFSVN---SSLIKEGGW 1127 >SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) Length = 1691 Score = 27.1 bits (57), Expect = 9.4 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 238 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVE 381 ++R + K E+W++ E KK E + R I RQ +EVE Sbjct: 145 KEREELKGKLRAEVWSEAKEEAKKDSEREKVRLEQEIFDLRRQRKEVE 192 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,355,284 Number of Sequences: 59808 Number of extensions: 279405 Number of successful extensions: 886 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 886 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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