Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...   132   1e-31
AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    38   0.006
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    30   1.2  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    30   1.2  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    28   3.5  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    28   3.5  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    28   4.7  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    28   4.7  
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ...    27   6.2  
AF038621-2|AAK71385.1|  329|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score =  132 bits (320), Expect = 1e-31
 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 3/161 (1%)
 Frame = +1

Query: 25  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
           MRIE CYFCSS +YPGHGIQFVRND  +F+FCRS+C+  F             A R+  G
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARRARG 60

Query: 205 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384
           KEL  D +   E+RR+ P+KY R ++ KTIEA K +  ++ +R  N I +RL+ G+ V+ 
Sbjct: 61  KELINDATQLLEQRRDEPVKYERAMFQKTIEAAKTISALKTKRYGNLIRKRLQPGKIVQK 120

Query: 385 QRDVREVQRDISLIKSPAA---GLKQRQALEATEMEVEPET 498
           +  + +V + + LI++P A   G+K R A +  +     ET
Sbjct: 121 KGLLAKVDKKMHLIRAPVANRDGVKTRAAAKEKKTAESMET 161


>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 25  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSK 129
           M++ETC +   +++PGHG + VR D K+  F   K
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGK 35


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/77 (28%), Positives = 40/77 (51%)
 Frame = +1

Query: 199 AGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREV 378
           AG E  +  + +  KRR    +  R    +  E  KKV+E ++R  ++  +  +++ REV
Sbjct: 429 AGNEKELSKTEQRAKRRQRVREKARLCAEQAKEEEKKVKE-QKRIEHDLRIMSMKKEREV 487

Query: 379 EWQRDVREVQRDISLIK 429
           + Q D  + +RDI  I+
Sbjct: 488 KHQLDFEKRKRDIDNIR 504


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/77 (28%), Positives = 40/77 (51%)
 Frame = +1

Query: 199 AGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREV 378
           AG E  +  + +  KRR    +  R    +  E  KKV+E ++R  ++  +  +++ REV
Sbjct: 429 AGNEKELSKTEQRAKRRQRVREKARLCAEQAKEEEKKVKE-QKRIEHDLRIMSMKKEREV 487

Query: 379 EWQRDVREVQRDISLIK 429
           + Q D  + +RDI  I+
Sbjct: 488 KHQLDFEKRKRDIDNIR 504


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 378 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR 515
           R  K+R +SP R   D    GW  T  S   + R  SG   NRS  R
Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSER 523


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 378 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR 515
           R  K+R +SP R   D    GW  T  S   + R  SG   NRS  R
Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSER 523


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/68 (26%), Positives = 38/68 (55%)
 Frame = +1

Query: 238 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDI 417
           E+R+N  +    E   +++E     EEI++ +S   + Q+L Q  E++ +R V+E+    
Sbjct: 392 EQRQNEEVARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKR-VQELTEQR 450

Query: 418 SLIKSPAA 441
            +++S A+
Sbjct: 451 KVLESKAS 458


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/68 (26%), Positives = 38/68 (55%)
 Frame = +1

Query: 238 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDI 417
           E+R+N  +    E   +++E     EEI++ +S   + Q+L Q  E++ +R V+E+    
Sbjct: 392 EQRQNEEVARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKR-VQELTEQR 450

Query: 418 SLIKSPAA 441
            +++S A+
Sbjct: 451 KVLESKAS 458


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 295  EAMKKVEEIRQRRSNNYIMQRLRQGREVE-WQRDVREVQRDISLIKSPAAGLKQRQA-LE 468
            +A +  EE+RQ + ++  ++R+R+G E++  +  +R    + + +K     + Q +A + 
Sbjct: 1774 DAARLAEELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIR 1833

Query: 469  ATEMEVEPE 495
            A E E++ E
Sbjct: 1834 AIEQELDGE 1842


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 295  EAMKKVEEIRQRRSNNYIMQRLRQGREVE-WQRDVREVQRDISLIKSPAAGLKQRQA-LE 468
            +A +  EE+RQ + ++  ++R+R+G E++  +  +R    + + +K     + Q +A + 
Sbjct: 1774 DAARLAEELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIR 1833

Query: 469  ATEMEVEPE 495
            A E E++ E
Sbjct: 1834 AIEQELDGE 1842


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical protein
            F59A6.5 protein.
          Length = 1286

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 23   KCV*KHVIS-VHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLT 190
            +CV  HVI   + G ++   SN S    +FS +  Q     + +RR     N LK T
Sbjct: 1228 ECVNAHVIGRQYEGVLISVSSNDSTEVHRFSTATGQKQKNNVSKRRGASPYNSLKRT 1284


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +1

Query: 295  EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 450
            +A +  EE+RQ + ++  + RLR+G E    + ++E+Q  + L ++ AA LK
Sbjct: 1770 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1815


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +1

Query: 295  EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 450
            +A +  EE+RQ + ++  + RLR+G E    + ++E+Q  + L ++ AA LK
Sbjct: 1770 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1815


>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 354 AIETGQRGRVAKRRARSPERHLFDKVTSGWSETATSFRSHRNGSGTRDNRSCGR 515
           A+    R R A R   SP      + T+G S+   S  S   G GTR   S  R
Sbjct: 44  AVARRGRNRAAARERASPYSRSRIRSTAGTSDAGPSSSSSVRGRGTRGTTSARR 97


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +1

Query: 295  EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 450
            +A +  EE+RQ + ++  + RLR+G E    + ++E+Q  + L ++ AA LK
Sbjct: 1773 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1818


>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform a protein.
          Length = 1219

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/89 (17%), Positives = 40/89 (44%)
 Frame = +1

Query: 232  EFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQR 411
            E ++R  +  K   E   +    +++ ++  Q+   NY++  + +  E   ++   E + 
Sbjct: 957  EEKERLEIEAKKEAERQREIKRKLEEQQQNAQKEHENYLISEIHKAAEETEKKRQNEEKE 1016

Query: 412  DISLIKSPAAGLKQRQALEATEMEVEPET 498
             +  + S         AL +++ME+EP +
Sbjct: 1017 KLDKMVSNRLAEADGVALISSKMEIEPSS 1045


>AF038621-2|AAK71385.1|  329|Caenorhabditis elegans Hypothetical
           protein M116.4 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 24/113 (21%), Positives = 43/113 (38%)
 Frame = -3

Query: 507 NFYXXXXXXXXXXXXXXXXFQTSRW*LYQRDVSLDFSHVSLPLYLSALSQSLHNIIITPS 328
           NFY                  T++W   + +VS   SH+    +   +  SLHN I   +
Sbjct: 75  NFYLLTDTTFLRFIDSQKTIDTTQWINQKVNVSQFISHILEIFHRPKVKLSLHNTIRCET 134

Query: 327 LSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGWVYRQFLTRSLTVSFSPFS 169
           + ++F      D     F  +F GH  + F  K        + ++ ++  PF+
Sbjct: 135 M-NIFEMFAGLDI--ETFQTIFYGHYKTSFYEKTLKMFALQSEAIRLNKLPFN 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,599
Number of Sequences: 27780
Number of extensions: 214163
Number of successful extensions: 725
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)