BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B05f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical pr... 132 1e-31 AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 38 0.006 U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical pr... 30 1.2 U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical pr... 30 1.2 U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 30 1.2 U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 30 1.2 U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 29 2.0 U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 2.0 Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 28 3.5 X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 28 3.5 U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 28 3.5 Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 4.7 Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 4.7 Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 28 4.7 J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 4.7 AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 27 6.2 AF038621-2|AAK71385.1| 329|Caenorhabditis elegans Hypothetical ... 27 6.2 >Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical protein C03D6.8 protein. Length = 162 Score = 132 bits (320), Expect = 1e-31 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 3/161 (1%) Frame = +1 Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204 MRIE CYFCSS +YPGHGIQFVRND +F+FCRS+C+ F A R+ G Sbjct: 1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARRARG 60 Query: 205 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384 KEL D + E+RR+ P+KY R ++ KTIEA K + ++ +R N I +RL+ G+ V+ Sbjct: 61 KELINDATQLLEQRRDEPVKYERAMFQKTIEAAKTISALKTKRYGNLIRKRLQPGKIVQK 120 Query: 385 QRDVREVQRDISLIKSPAA---GLKQRQALEATEMEVEPET 498 + + +V + + LI++P A G+K R A + + ET Sbjct: 121 KGLLAKVDKKMHLIRAPVANRDGVKTRAAAKEKKTAESMET 161 >AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal protein, large subunitprotein 24.1 protein. Length = 159 Score = 37.5 bits (83), Expect = 0.006 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +1 Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSK 129 M++ETC + +++PGHG + VR D K+ F K Sbjct: 1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGK 35 >U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical protein C41A3.2b protein. Length = 526 Score = 29.9 bits (64), Expect = 1.2 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = +1 Query: 199 AGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREV 378 AG E + + + KRR + R + E KKV+E ++R ++ + +++ REV Sbjct: 429 AGNEKELSKTEQRAKRRQRVREKARLCAEQAKEEEKKVKE-QKRIEHDLRIMSMKKEREV 487 Query: 379 EWQRDVREVQRDISLIK 429 + Q D + +RDI I+ Sbjct: 488 KHQLDFEKRKRDIDNIR 504 >U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical protein C41A3.2a protein. Length = 795 Score = 29.9 bits (64), Expect = 1.2 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = +1 Query: 199 AGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREV 378 AG E + + + KRR + R + E KKV+E ++R ++ + +++ REV Sbjct: 429 AGNEKELSKTEQRAKRRQRVREKARLCAEQAKEEEKKVKE-QKRIEHDLRIMSMKKEREV 487 Query: 379 EWQRDVREVQRDISLIK 429 + Q D + +RDI I+ Sbjct: 488 KHQLDFEKRKRDIDNIR 504 >U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/polycomb) domaincontaining protein 2, isoform c protein. Length = 1510 Score = 29.9 bits (64), Expect = 1.2 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +3 Query: 378 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR 515 R K+R +SP R D GW T S + R SG NRS R Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSER 523 >U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/polycomb) domaincontaining protein 2, isoform a protein. Length = 1507 Score = 29.9 bits (64), Expect = 1.2 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +3 Query: 378 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR 515 R K+R +SP R D GW T S + R SG NRS R Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSER 523 >U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical protein C18C4.5b protein. Length = 1046 Score = 29.1 bits (62), Expect = 2.0 Identities = 18/68 (26%), Positives = 38/68 (55%) Frame = +1 Query: 238 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDI 417 E+R+N + E +++E EEI++ +S + Q+L Q E++ +R V+E+ Sbjct: 392 EQRQNEEVARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKR-VQELTEQR 450 Query: 418 SLIKSPAA 441 +++S A+ Sbjct: 451 KVLESKAS 458 >U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical protein C18C4.5a protein. Length = 1022 Score = 29.1 bits (62), Expect = 2.0 Identities = 18/68 (26%), Positives = 38/68 (55%) Frame = +1 Query: 238 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDI 417 E+R+N + E +++E EEI++ +S + Q+L Q E++ +R V+E+ Sbjct: 392 EQRQNEEVARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKR-VQELTEQR 450 Query: 418 SLIKSPAA 441 +++S A+ Sbjct: 451 KVLESKAS 458 >Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein K12F2.1 protein. Length = 1969 Score = 28.3 bits (60), Expect = 3.5 Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Frame = +1 Query: 295 EAMKKVEEIRQRRSNNYIMQRLRQGREVE-WQRDVREVQRDISLIKSPAAGLKQRQA-LE 468 +A + EE+RQ + ++ ++R+R+G E++ + +R + + +K + Q +A + Sbjct: 1774 DAARLAEELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIR 1833 Query: 469 ATEMEVEPE 495 A E E++ E Sbjct: 1834 AIEQELDGE 1842 >X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3 protein. Length = 1969 Score = 28.3 bits (60), Expect = 3.5 Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Frame = +1 Query: 295 EAMKKVEEIRQRRSNNYIMQRLRQGREVE-WQRDVREVQRDISLIKSPAAGLKQRQA-LE 468 +A + EE+RQ + ++ ++R+R+G E++ + +R + + +K + Q +A + Sbjct: 1774 DAARLAEELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIR 1833 Query: 469 ATEMEVEPE 495 A E E++ E Sbjct: 1834 AIEQELDGE 1842 >U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical protein F59A6.5 protein. Length = 1286 Score = 28.3 bits (60), Expect = 3.5 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +2 Query: 23 KCV*KHVIS-VHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLT 190 +CV HVI + G ++ SN S +FS + Q + +RR N LK T Sbjct: 1228 ECVNAHVIGRQYEGVLISVSSNDSTEVHRFSTATGQKQKNNVSKRRGASPYNSLKRT 1284 >Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical protein F11C3.3 protein. Length = 1963 Score = 27.9 bits (59), Expect = 4.7 Identities = 17/52 (32%), Positives = 32/52 (61%) Frame = +1 Query: 295 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 450 +A + EE+RQ + ++ + RLR+G E + ++E+Q + L ++ AA LK Sbjct: 1770 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1815 >Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein F11C3.3 protein. Length = 1963 Score = 27.9 bits (59), Expect = 4.7 Identities = 17/52 (32%), Positives = 32/52 (61%) Frame = +1 Query: 295 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 450 +A + EE+RQ + ++ + RLR+G E + ++E+Q + L ++ AA LK Sbjct: 1770 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1815 >Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical protein T24D1.2 protein. Length = 464 Score = 27.9 bits (59), Expect = 4.7 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = +3 Query: 354 AIETGQRGRVAKRRARSPERHLFDKVTSGWSETATSFRSHRNGSGTRDNRSCGR 515 A+ R R A R SP + T+G S+ S S G GTR S R Sbjct: 44 AVARRGRNRAAARERASPYSRSRIRSTAGTSDAGPSSSSSVRGRGTRGTTSARR 97 >J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain protein. Length = 1966 Score = 27.9 bits (59), Expect = 4.7 Identities = 17/52 (32%), Positives = 32/52 (61%) Frame = +1 Query: 295 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 450 +A + EE+RQ + ++ + RLR+G E + ++E+Q + L ++ AA LK Sbjct: 1773 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1818 >AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, unconventional myosinprotein 8, isoform a protein. Length = 1219 Score = 27.5 bits (58), Expect = 6.2 Identities = 16/89 (17%), Positives = 40/89 (44%) Frame = +1 Query: 232 EFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQR 411 E ++R + K E + +++ ++ Q+ NY++ + + E ++ E + Sbjct: 957 EEKERLEIEAKKEAERQREIKRKLEEQQQNAQKEHENYLISEIHKAAEETEKKRQNEEKE 1016 Query: 412 DISLIKSPAAGLKQRQALEATEMEVEPET 498 + + S AL +++ME+EP + Sbjct: 1017 KLDKMVSNRLAEADGVALISSKMEIEPSS 1045 >AF038621-2|AAK71385.1| 329|Caenorhabditis elegans Hypothetical protein M116.4 protein. Length = 329 Score = 27.5 bits (58), Expect = 6.2 Identities = 24/113 (21%), Positives = 43/113 (38%) Frame = -3 Query: 507 NFYXXXXXXXXXXXXXXXXFQTSRW*LYQRDVSLDFSHVSLPLYLSALSQSLHNIIITPS 328 NFY T++W + +VS SH+ + + SLHN I + Sbjct: 75 NFYLLTDTTFLRFIDSQKTIDTTQWINQKVNVSQFISHILEIFHRPKVKLSLHNTIRCET 134 Query: 327 LSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGWVYRQFLTRSLTVSFSPFS 169 + ++F D F +F GH + F K + ++ ++ PF+ Sbjct: 135 M-NIFEMFAGLDI--ETFQTIFYGHYKTSFYEKTLKMFALQSEAIRLNKLPFN 184 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,409,599 Number of Sequences: 27780 Number of extensions: 214163 Number of successful extensions: 725 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 725 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -