Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B05f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative 142 1e-34
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 56 2e-08
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A) 56 2e-08
At1g11330.1 68414.m01301 S-locus lectin protein kinase family pr... 31 0.47
At1g76870.1 68414.m08945 hypothetical protein 30 1.1
At1g28570.1 68414.m03517 GDSL-motif lipase, putative similar to ... 30 1.1
At1g12170.1 68414.m01409 F-box family protein contains F-box dom... 28 4.4
At5g50440.1 68418.m06246 Golgi SNARE protein membrin 12 (MEMB12)... 27 5.8
At5g38590.2 68418.m04666 F-box family protein contains F-box dom... 27 5.8
At5g38590.1 68418.m04667 F-box family protein contains F-box dom... 27 5.8
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 27 5.8
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 27 5.8
>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
Length = 159
Score = 142 bits (345), Expect = 1e-34
Identities = 67/161 (41%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Frame = +1
Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
MR+E C+FCSS +YPGHGIQFVRND KIFRFCRSKCH F A+R G
Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60
Query: 205 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 384
K+++ D +FEFEK+RN P +Y+R + T+ A+KK+ +IR R +I RL+ ++ +
Sbjct: 61 KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120
Query: 385 QRDVREVQRDISLIKSPAAGLKQRQALEATEME-VEPETIE 504
D++E+ ++I ++++P A Q+ ++ +E + V+ E +E
Sbjct: 121 NDDMKELDQNIHMVQAPGA---QKIKVDVSEKKSVQNEAME 158
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
++ E C F ++YPG GI+F+R+D ++F F SKC F YRK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62
Query: 205 KELSIDPSFEFEKRRNVPLK--YNRELWTKTIEAMKK 309
K D + E KRR K Y+R + T+E ++K
Sbjct: 63 K----DAAQEAVKRRRRATKKPYSRSIVGATLEVIQK 95
>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
Length = 164
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 25 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 204
++ E C F ++YPG GI+F+R+D ++F F SKC F YRK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62
Query: 205 KELSIDPSFEFEKRRNVPLK--YNRELWTKTIEAMKK 309
K D + E KRR K Y+R + T+E ++K
Sbjct: 63 K----DAAQEAVKRRRRATKKPYSRSIVGATLEVIQK 95
>At1g11330.1 68414.m01301 S-locus lectin protein kinase family
protein contains Pfam domains, PF00954: S-locus
glycoprotein family, PF00069: Protein kinase domain, and
PF01453: Lectin (probable mannose binding)
Length = 840
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 309 FLHSFDCFSPQFAIVFQGHISSLFKLKGWV-YRQFLTRSLTVSFSPFSFTGILL 151
F H +D F P+ + G KL W + T + T +PF+F +L+
Sbjct: 158 FKHPYDSFMPRMTLGTDGRTGGNLKLTSWTSHDDPSTGNYTAGIAPFTFPELLI 211
>At1g76870.1 68414.m08945 hypothetical protein
Length = 385
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 388 RDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEV 507
R +V R ISL AAGL QRQ +E+ +E+E +++
Sbjct: 292 RSQADVNRGISLDSRKAAGL-QRQQIESKSLELEGRKLQI 330
>At1g28570.1 68414.m03517 GDSL-motif lipase, putative similar to
lipase [Arabidopsis thaliana] GI:1145627; contains
InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
family
Length = 384
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -3
Query: 429 LYQRDVSLDFSHVSLPLYLSALSQSLHNIIITPS 328
L +R + +++VSL + LS+ +SL N+ ++PS
Sbjct: 121 LEERGIHFPYTNVSLAVQLSSFKESLPNLCVSPS 154
>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 2 HTCLKPIKCV*KHVISVHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGL 181
+T K V H++ V P F+L T+S + +S SV N Q++ R +P+ + L
Sbjct: 34 NTLFKSKSFVNNHLVRVRPQFLLWTDSKM------YSVSVNLNDDQKIDMRELPLDIPYL 87
Query: 182 KLTVRLRVRNC 214
+R C
Sbjct: 88 NNFMRTYFTPC 98
>At5g50440.1 68418.m06246 Golgi SNARE protein membrin 12 (MEMB12)
identical to Membrin 12 (AtMEMB12) (Golgi SNAP receptor
complex member 2-2) (GI:27805575)(SP:Q9FK28)
{Arabidopsis thaliana}; similar to Probable 27 kDa Golgi
SNARE protein (Golgi SNAP receptor complex member 2)
(SP:Q9SJL6) [Arabidopsis thaliana]
Length = 219
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 247 RNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDV 396
R++P+K R+LW + E + + E + Y+ + R+ E + + D+
Sbjct: 63 RSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADL 112
>At5g38590.2 68418.m04666 F-box family protein contains F-box domain
Pfam:PF00646
Length = 410
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 444 TSRW*LYQRDVSL-DFSHVSLPLYLSALSQSL 352
TSRW DV L DF H +LPL+ + + +SL
Sbjct: 47 TSRWCRKPGDVGLRDFIHKNLPLHRAPVIESL 78
>At5g38590.1 68418.m04667 F-box family protein contains F-box domain
Pfam:PF00646
Length = 289
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 444 TSRW*LYQRDVSL-DFSHVSLPLYLSALSQSL 352
TSRW DV L DF H +LPL+ + + +SL
Sbjct: 47 TSRWCRKPGDVGLRDFIHKNLPLHRAPVIESL 78
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/62 (19%), Positives = 30/62 (48%)
Frame = +1
Query: 223 PSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVRE 402
P F + +P + R +W +E+ K + ++ + Y+ +R V +++V++
Sbjct: 903 PEFNYGDGSYIPKRSRRSIWKAAVESSKNISQLALQ--VRYLDMNIRWSELVRPEQNVQD 960
Query: 403 VQ 408
V+
Sbjct: 961 VK 962
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 27.5 bits (58), Expect = 5.8
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 268 NRELWTKTIEAMKKVEEIRQRR--SNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAA 441
NR+L + E +K+V EI+QR N L + RE Q +R+ + +S ++
Sbjct: 175 NRQLEQQMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQK-LH 233
Query: 442 GLKQRQALE 468
L Q Q E
Sbjct: 234 ELAQNQLFE 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,808,658
Number of Sequences: 28952
Number of extensions: 200676
Number of successful extensions: 665
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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