Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B04f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6CT08 Cluster: Autophagy-related protein 9; n=1; Kluyv...    32   6.9  
UniRef50_Q7PDR1 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    32   9.2  

>UniRef50_Q6CT08 Cluster: Autophagy-related protein 9; n=1;
           Kluyveromyces lactis|Rep: Autophagy-related protein 9 -
           Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 908

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 505 SRISDLTRNHVTVTTCASLRSLTWRINICLCYFQYN*K 392
           + I DL+     + TCA  ++L W IN+C+  F +N K
Sbjct: 447 NNILDLSLPVPLLRTCALTKTLEWNINLCILGFAFNEK 484


>UniRef50_Q7PDR1 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=2;
            Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
            PFEMP3 - Plasmodium yoelii yoelii
          Length = 1336

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 301  YTLVYIIRAALKSFQKTKTVYEAGDSTKNAFFNYTESNTNI 423
            Y LVY+++   K F+K K V          +FN T  N N+
Sbjct: 888  YNLVYLLKTVEKDFEKLKPVINFYSRNNTLYFNNTIRNINL 928


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,489,229
Number of Sequences: 1657284
Number of extensions: 7009845
Number of successful extensions: 12801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12796
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)