BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B04f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 26 3.9 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.8 SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 9.0 >SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 278 Score = 25.8 bits (54), Expect = 3.9 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 237 CITKI*KSITNILKHIIFVITISISLSWR 151 CITK + ++ K + TI IS SWR Sbjct: 112 CITKHVDRLLDLCKRNLSTFTIDISSSWR 140 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 25.0 bits (52), Expect = 6.8 Identities = 7/15 (46%), Positives = 13/15 (86%) Frame = -1 Query: 476 CNSHHMRFFEIVDLA 432 C SHH+ F++++D+A Sbjct: 1296 CQSHHVIFWDLIDVA 1310 >SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 595 Score = 24.6 bits (51), Expect = 9.0 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +3 Query: 429 MRQVNDLKEAHVVTVT-WFRVKSLIRD 506 ++Q+NDLKE H T W V + R+ Sbjct: 569 LKQLNDLKEKHAQLQTKWKSVSEMFRN 595 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,907,175 Number of Sequences: 5004 Number of extensions: 33450 Number of successful extensions: 62 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 62 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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