Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0148 - 7085892-7086011,7086681-7087004,7088258-7088419,708...    28   5.2  
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779...    27   6.9  

>05_02_0148 -
           7085892-7086011,7086681-7087004,7088258-7088419,
           7088866-7089066,7089148-7089332,7089459-7089588
          Length = 373

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 213 ITNILKHIIF----VITISISLSWRTIRMSYVSKAIIIR*FCFVAKLF 82
           +  ++K + F    ++ +++SL W ++    ++K  II   CF+  LF
Sbjct: 75  VPELIKFVFFANLSIVGMNVSLMWNSVGFYQIAKLCIIPVLCFLEILF 122


>03_05_0714 -
           27076881-27077218,27077332-27077482,27077768-27077903,
           27078309-27078457,27079141-27079267,27080033-27080172,
           27080264-27080329,27080760-27080901,27081021-27081115,
           27081640-27082140
          Length = 614

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 290 IISRIRWFIL*GLH*NLFKKLRQFMKLAIQQKTLFLIILK 409
           I+SRI W I   +H  L +K+ +F+   +  + +  I+++
Sbjct: 338 ILSRIMWIIGNTVHATLLQKILEFLSALVDDQDVITILIE 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,972,247
Number of Sequences: 37544
Number of extensions: 168246
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)