Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B04f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2737|AAF53544.1|  796|Drosophila melanogaster CG4631-PA...    29   2.9  
AY118671-1|AAM50531.1| 1240|Drosophila melanogaster AT03020p pro...    28   8.8  
AE013599-2720|AAF57673.2| 1593|Drosophila melanogaster CG30115-P...    28   8.8  

>AE014134-2737|AAF53544.1|  796|Drosophila melanogaster CG4631-PA
           protein.
          Length = 796

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 371 AIQQKTLFLIILKVTQTYINAPSQRSQRSACGDC 472
           +I  +TL LI++ + Q ++N P +  Q SAC  C
Sbjct: 125 SIPTRTL-LILISMIQYFLNLPKRCGQNSACSGC 157


>AY118671-1|AAM50531.1| 1240|Drosophila melanogaster AT03020p
           protein.
          Length = 1240

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 398 IILKVTQTYINAPSQRSQRSACGDCYMVSR*ITYSRPSNM 517
           +I  V +T +N P  RS  +AC      S  +TY+R  ++
Sbjct: 76  LIEAVNKTLVNKPLVRSSSAACASTICSSPLLTYARTKSL 115


>AE013599-2720|AAF57673.2| 1593|Drosophila melanogaster CG30115-PD,
           isoform D protein.
          Length = 1593

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 398 IILKVTQTYINAPSQRSQRSACGDCYMVSR*ITYSRPSNM 517
           +I  V +T +N P  RS  +AC      S  +TY+R  ++
Sbjct: 432 LIEAVNKTLVNKPLVRSSSAACASTICSSPLLTYARTKSL 471


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,263,641
Number of Sequences: 53049
Number of extensions: 316181
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)