Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.9  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   3.9  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   5.2  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    25   5.2  

>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 350 DVSWL*IENCFYRYNCIKCLFEIKTIYILIFI 445
           D   L +  CF R N IKC  ++ T Y + F+
Sbjct: 106 DAISLLVARCFSRANPIKCSNQVNTQYSVSFL 137


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 15  EVFFEINLFYCKLHLNLRSRLVCMEQSINCLNL 113
           E +FE++  +C +  +L  R+  ++Q INC  L
Sbjct: 190 EWYFEVHSDFCLVWNDLVRRVFAVQQLINCKKL 222


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 69  SRLVCMEQSINCLNLT*YLRLDYYKIGKY 155
           SRLV  E   + LN   ++ LD Y++GK+
Sbjct: 178 SRLVPFEIQSSTLNSASFIYLDSYELGKF 206


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 9   RHEVFFEINLFYCKLHLNLRSRLVCM 86
           R E  FE  L +CKL  + + RLV +
Sbjct: 113 RDETTFEAKLMFCKLPKDAQDRLVLL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,987
Number of Sequences: 5004
Number of extensions: 36059
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)