Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B03f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   2.7  
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    23   8.2  
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    23   8.2  
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    23   8.2  
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    23   8.2  

>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 377 CFYRYNCIKCL 409
           CF++ NCI+CL
Sbjct: 33  CFFQKNCIECL 43


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 505 ILLKIDQKYPSIILNTFDTI 446
           ++ KI ++YP  I+NT+  +
Sbjct: 47  LISKIREEYPDRIMNTYSVV 66


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 505 ILLKIDQKYPSIILNTFDTI 446
           ++ KI ++YP  I+NT+  +
Sbjct: 47  LISKIREEYPDRIMNTYSVV 66


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 505 ILLKIDQKYPSIILNTFDTI 446
           ++ KI ++YP  I+NT+  +
Sbjct: 47  LISKIREEYPDRIMNTYSVV 66


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 505 ILLKIDQKYPSIILNTFDTI 446
           ++ KI ++YP  I+NT+  +
Sbjct: 47  LISKIREEYPDRIMNTYSVV 66


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,446
Number of Sequences: 2352
Number of extensions: 7917
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)