Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 33 0.026
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 0.32
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 29 0.42
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.56
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.73
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 0.97
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.3
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 1.7
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 2.2
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 3.0
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.0
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 3.9
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 5.2
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.8
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 9.0
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 9.0
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 33.1 bits (72), Expect = 0.026
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +3
Query: 156 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 335
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 336 AKY-TASDAYASTTLISAVV-RNTTTFKSSITERAEKCLTA 452
++Y + YA T S + N T FK++ + + L A
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHA 224
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.5 bits (63), Expect = 0.32
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +3
Query: 117 ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVT--ASRTVPTRQTP 290
E+TT + M+ + T + + + +T ++ + + ET + A+ T P +T
Sbjct: 42 EITTMTIP--MEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETT 99
Query: 291 DAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCL 470
+T+T P + T + +TT+ V T + ++T E+ T L +
Sbjct: 100 TIPTVETTTTP--MVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAM 157
Query: 471 TSPV 482
T+P+
Sbjct: 158 TTPM 161
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 408 TWWYCGP--RH*SELSRHKHRWRYTSQSD 328
T+WY P RH E + H W Y+S D
Sbjct: 44 TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 0.56
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +3
Query: 114 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPD 293
P T +RS T ++ ++T+ Q S + N+ TP +T+S +V TP
Sbjct: 339 PAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTP-ITSS-SVLNSSTP- 395
Query: 294 AWCAQTSTKPGNRIAKYTASDAYASTTLI--SAVVRNTTTFKSSITERAEKCLTALKARC 467
TS+ N T+S S+T I S+++ ++T SS + +T+ A
Sbjct: 396 ----ITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALN 451
Query: 468 LTSPV 482
++P+
Sbjct: 452 TSTPI 456
Score = 25.0 bits (52), Expect = 6.8
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +3
Query: 198 STAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTST-----KPGNRIAKYTASDAY 362
+T+ S+ + NT TP ++S + + TST N T+S
Sbjct: 2767 NTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVL 2826
Query: 363 ASTTLI--SAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTS 509
S+T I S+V+ ++T SS +T+ ++P+ T TS
Sbjct: 2827 NSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTS 2877
Score = 24.6 bits (51), Expect = 9.0
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +3
Query: 219 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLI--SAVV 392
S+ NT TP +T+S +V TP TS+ N T+S A ++T I S+V+
Sbjct: 2330 SSTVVNTSTP-ITSS-SVLNSSTP-----ITSSTVVNTSTPITSSTALNTSTSITSSSVL 2382
Query: 393 RNTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTS 509
++T SS +T+ ++P+ T TS
Sbjct: 2383 NSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTS 2421
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 0.73
Identities = 20/100 (20%), Positives = 41/100 (41%)
Frame = +3
Query: 198 STAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTL 377
+++A S ST + S +PT + T T+P ++ + ++ +
Sbjct: 735 NSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQGSVVPTTSTGSS 794
Query: 378 ISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTG 497
+++ TTT + +TE + T + + A GTG
Sbjct: 795 VTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTG 834
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 228 STNTETPCVTASRTVPTRQTP--DAWCAQTSTKPGNRIAKYTA-SDAYASTTLISAVVRN 398
+TN+ V+ S T PT TP ++ A TST + + + AST L ++ V
Sbjct: 589 NTNSGNGDVSGSVTTPT-STPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAP 647
Query: 399 TTTFKSS 419
T+TF SS
Sbjct: 648 TSTFTSS 654
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 0.97
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 424 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 245
++ LN+ V + +++++E A + I PG +E+ ASG + T+ +
Sbjct: 80 IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTC 139
Query: 244 VSVFVD 227
++ VD
Sbjct: 140 IAYVVD 145
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 203 CSAGRVCEINEHGDAMCNCIKDC 271
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 204 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 374
A+ VSA + TP V+++ + + TS + I+ T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 375 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 482
LI + +N T F + E+ CL LK + + SP+
Sbjct: 82 LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 109 FCLMVSLLVQALRHSVLDVFSLRD 38
FCL ++ ++ LR+SV V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 219 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRN 398
S S+++ + T+ + P+ + TS+ G + TASD AS +IS+ N
Sbjct: 53 STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110
Query: 399 T 401
+
Sbjct: 111 S 111
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.0
Identities = 28/134 (20%), Positives = 57/134 (42%)
Frame = +3
Query: 51 NTSSTECLRAWTRSDTMRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKS 230
+TSS+ +W + + T ST S+ + ST T ST+ S+ +
Sbjct: 609 STSSSSTQVSWNSTTPITGTSTSKVTSST-SIPLTSTNRTSTTFT---SSTSISTSSSST 664
Query: 231 TNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRNTTTF 410
+ T + S + + T + + ST P T + ++ +++ +S++ N+T
Sbjct: 665 ATSSTSFASESSSFYSNVTTSS--STVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEV 722
Query: 411 KSSITERAEKCLTA 452
K++ T + TA
Sbjct: 723 KTASTSSGTEIKTA 736
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +3
Query: 252 VTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVR 395
V + +P + ++W S +P R Y STT ++ VR
Sbjct: 206 VVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVR 253
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 283 CLVGTVLDAVTHGVSVFVDFADT-SC 209
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 114 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTET 245
P+ +TF+ +L R+ K +W L S+ + V K+T ET
Sbjct: 295 PQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKATLLET 336
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 273 PTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRNT 401
P RQT A T+ KP + + + S+ +++ +R T
Sbjct: 110 PLRQTASPQVADTNLKPSLAVTNLNSDETNTSSEPVTSPLRTT 152
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -1
Query: 452 CSQAFLGTFRNTRFERGGIADHGTDQSCRGISIAGGILRNP 330
C FLG F F H + GI++ G RNP
Sbjct: 709 CPGVFLGAFGMVGFPSFHTLKHKAELVYHGINVFGNESRNP 749
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 264 RTVPTRQTPDAWCAQTSTKPGNRIA---KYTASDAYASTTLISAVVRNTTTFKSSITERA 434
RTVP P ++C + + G +IA S+ +A+ S ++ + T + S+ E A
Sbjct: 661 RTVPAIHCPYSYCMEITNSSGWKIAYSGDTRPSEDFANIAKDSTLLIHEATLEDSMHEIA 720
Query: 435 EK 440
K
Sbjct: 721 IK 722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,151
Number of Sequences: 5004
Number of extensions: 37477
Number of successful extensions: 129
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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