Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 0.98
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 2.3
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 2.3
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 29 2.3
11_06_0344 + 22540436-22540737,22541304-22543545 28 4.0
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 4.0
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 28 4.0
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 5.2
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 5.2
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 28 5.2
03_02_0520 + 9092020-9092079,9092253-9093047 27 6.9
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 27 9.1
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 27 9.1
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 27 9.1
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382... 27 9.1
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 30.3 bits (65), Expect = 0.98
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 327 NRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEK-CLTALKARCLTSPVACGTG 497
++I S + S +I A+ RN + + S+ E + C++ K + LT+PVA G G
Sbjct: 380 HKIGPVEESASLPSMEMIPAI-RNLNSHQESLEESSSADCISPTKRKALTAPVAKGLG 436
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 261 SRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 362
+R P QTPDA A + T+P ++ +A +AY
Sbjct: 380 TRIQPYTQTPDADSATSGTQPAAKLNSISAMEAY 413
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 194 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQ 328
K +A VCE + G+ + +C + D RM C + E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 299 VCTNFNETWQSDCEVYRQRCLCLDNSDQCRGPQYHHVQIEYYGTCREMPDCTESEM--SD 472
+CTN + DC R C D+ QCRG + + E G C ++ + +E+E+ SD
Sbjct: 232 MCTNVRLVF--DCT--RDGCRRKDSWAQCRGCFFCVARCETCGGCIDLEELSETELACSD 287
Query: 473 FPRRMRDWL 499
F M WL
Sbjct: 288 F-LCMECWL 295
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 405 TFKSSITERAEKCLTALKARCLTSP 479
T +S ERAE+C + L RC+ P
Sbjct: 299 TLQSGFEERAEECFSQLVQRCIIRP 323
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 180 KTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKP 323
+T A ++Q ++ T+ ++ ++S TV + + P +W TST P
Sbjct: 390 RTTATGVASSQSLTKSKTDPQSNSFSSSSTVSSTKLPSSWNDDTSTVP 437
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 357 AYASTTLISAV--VRNTTTFKSSITERA-EKCLTALKARCLTSPVACGTGFLTSCATW 521
+Y S L+S V R K+S++ + C L C S CG F T CA +
Sbjct: 290 SYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALY 347
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -2
Query: 250 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 107
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 87 SSKLSDIPCSMCSASEMSPRPSCSDVG 7
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = -2
Query: 424 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 245
++ LN+ + +I V+E A Y + PG +E+ ASG +
Sbjct: 140 ILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 199
Query: 244 VSVFVDFADTSCAAVDFQARVFH 176
V+ VD S + V F + + +
Sbjct: 200 VAYVVD-TPRSTSPVTFMSNMLY 221
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 64 VLDVFSLRDVPAAELLRRWT 5
VLD+ +++ +PA +L+RWT
Sbjct: 138 VLDLMNIKSLPAQYILKRWT 157
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 322 LAIGLRSIPPAMLMPRQL*SVPWSAIPPRSNRVLR 426
+A+ LR++P +L L S+P S+ PP +LR
Sbjct: 1 MALALRALPRRLLRHPLLHSMPLSSSPPDPRELLR 35
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 127 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWT 5
+ + G F + L AL+ VLD+ ++ +PA +L+RWT
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWT 215
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 14 SEQLGRGDISEAEHIEHGMSESLDEKR 94
+E L RG + H +HG E+LDEKR
Sbjct: 588 TEYLSRGSLYRILH-KHGARENLDEKR 613
>01_01_0521 -
3826257-3826616,3826758-3826918,3826992-3827049,
3827426-3827497,3827582-3827639,3828231-3828347,
3828630-3828782,3829182-3829346,3829814-3830132,
3830276-3830780
Length = 655
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 326 QSDCEVYRQRCLCLDNSDQC-RGPQYHHVQIEYYGTCRE 439
+ +C RC+ S +C R P + +YYG+CR+
Sbjct: 612 EDECTDEDDRCVSWAASGECDRNPVFMIGSSDYYGSCRK 650
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,692,817
Number of Sequences: 37544
Number of extensions: 293203
Number of successful extensions: 928
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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