Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.7  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   8.7  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 281 LRCSPTHQSDLKIQQPSSSSPNLLYQ 204
           L  SP     +  Q   S SPN +YQ
Sbjct: 326 LTSSPPPPYQISAQPTPSQSPNQIYQ 351


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 133 NYICTCTP*F 104
           +YICTC P F
Sbjct: 44  SYICTCKPGF 53


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 485 LKHCRWCGLSEQPLMPEMRC 426
           LK C   G+  + ++PE++C
Sbjct: 245 LKKCLSVGMRPECVVPEVQC 264


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = -1

Query: 344 HQTFCQSCSANSPKMVHIQQQLRCSPTHQSDLKIQQPSS 228
           HQ   QS +  +P           SP H S      P++
Sbjct: 20  HQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAA 58


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = -1

Query: 344 HQTFCQSCSANSPKMVHIQQQLRCSPTHQSDLKIQQPSS 228
           HQ   QS +  +P           SP H S      P++
Sbjct: 20  HQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAA 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,224
Number of Sequences: 336
Number of extensions: 1997
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)