Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    44   7e-07
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 44.4 bits (100), Expect = 7e-07
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
 Frame = +2

Query: 137 LSRTRSHLESLQSEYPSIDIVDVDIGDWEKTRKVVE----SLGHFDALVNNAAVAVCEPF 304
           + + ++ +E L+S+   +  +  D+ +     KV+E    +LG  D L+NNA + +    
Sbjct: 41  VDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTL 100

Query: 305 LDCSPSNFDKTFDVNVKAVLNISQVVARKMIENK--THGAIVNISSQASKAAL---KDHT 469
            +    ++ K FD+N+  +  + Q V  K+++ K   +G IVNI+  +    L   ++  
Sbjct: 101 QNDEVLDWKKIFDINLLGLTCMIQEVL-KLMKKKGINNGIIVNINDASGLNLLPMNRNRP 159

Query: 470 IYSASKAALDALT 508
            Y ASK AL  LT
Sbjct: 160 AYLASKCALTTLT 172


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 241 NNLPRLLPISYINVYNVYRGVFT 173
           N LP  + I+  N Y V +G FT
Sbjct: 52  NILPNNISIAGQNTYKVAKGAFT 74


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
 Frame = -1

Query: 500 HPK---QLLKHCRWCGLSE 453
           HP+   +L K C+W G+ E
Sbjct: 340 HPRYRQELQKRCKWMGIHE 358


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
 Frame = -1

Query: 500 HPK---QLLKHCRWCGLSE 453
           HP+   +L K C+W G+ E
Sbjct: 340 HPRYRQELQKRCKWMGIHE 358


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 305 KMVHIQQQLRCSPTHQSDLKIQQPSSSSPNLLYQRL 198
           K+   Q+QL+     +S  K+ +    +  LLYQ +
Sbjct: 364 KLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMI 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,846
Number of Sequences: 438
Number of extensions: 2021
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)