Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   2.2  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   6.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.0  

>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 145 RLYNNGFHSNLVYAVSFINI 86
           RLY  GFHSN  + +SF +I
Sbjct: 192 RLYAFGFHSNNAWLISFYSI 211


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 175 FNIFILTLYNTSGHYFHNSIIRFRFIF 255
           F +F   +Y+T G+ + NS++ F ++F
Sbjct: 436 FPLFGQDMYDTLGYGWGNSLLAFMYVF 462


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 222 EIMTTSIVESQNKNIKFTLACSDFFLDF 139
           E++   +V S +KN++   AC D F  F
Sbjct: 93  EVVNMLLVASSSKNLEVLSACVDCFATF 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,240
Number of Sequences: 5004
Number of extensions: 23777
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)