Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308A10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603 33 0.14
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 31 0.42
01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524... 31 0.42
01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858 31 0.74
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646... 29 1.7
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 5.2
>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
Length = 134
Score = 33.1 bits (72), Expect = 0.14
Identities = 10/48 (20%), Positives = 23/48 (47%)
Frame = +2
Query: 317 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 460
+H+ H++ H+ D++H+ D + D + D++H+ D
Sbjct: 71 NHVSRDTHEVSCDICHVSDDFYHVSRDTREVSCDTCQVSDDFYHVSRD 118
Score = 31.5 bits (68), Expect = 0.42
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 359 HHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 460
+ + D++H+ D H + D H+ D++H+ D
Sbjct: 64 YQVSDDFNHVSRDTHEVSCDICHVSDDFYHVSRD 97
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 338 HQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 460
+Q+ ++H+ D H + D H+ D +H+ D + D
Sbjct: 64 YQVSDDFNHVSRDTHEVSCDICHVSDDFYHVSRDTREVSCD 104
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +2
Query: 356 YHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCHH 469
++ + P + + D +H+ D H + D H+ D +H
Sbjct: 56 HNRMIPSRYQVSDDFNHVSRDTHEVSCDICHVSDDFYH 93
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 31.5 bits (68), Expect = 0.42
Identities = 10/48 (20%), Positives = 23/48 (47%)
Frame = +2
Query: 317 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 460
+H+ ++ + D++H+ D H + D H+ D++H+ D
Sbjct: 55 YHVSRDTREVSCETCQVSDDFNHVLRDTHEVLCDTCHVSGDFYHVSRD 102
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 341 QIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIR 454
Q+ ++H+ D H + D H+ D +H+ D +R
Sbjct: 70 QVSDDFNHVLRDTHEVLCDTCHVSGDFYHVSRDTREMR 107
>01_06_0247 +
27851206-27851255,27851382-27851496,27852280-27852468,
27853698-27854057,27854138-27854201,27854365-27854504,
27854610-27854918,27855135-27855389
Length = 493
Score = 31.5 bits (68), Expect = 0.42
Identities = 9/48 (18%), Positives = 24/48 (50%)
Frame = +2
Query: 317 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 460
+H+ ++ + + +++H+ D H + D H+ D++H+ D
Sbjct: 61 YHVSRDTREVSCETYQVPDNFNHVSRDTHEVSCDTCHVLDDFYHVSRD 108
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 338 HQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPD 460
+Q+ ++H+ D H + D H+ D +H+ D + D
Sbjct: 75 YQVPDNFNHVSRDTHEVSCDTCHVLDDFYHVSRDTREVSCD 115
>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
Length = 275
Score = 30.7 bits (66), Expect = 0.74
Identities = 10/51 (19%), Positives = 23/51 (45%)
Frame = +2
Query: 317 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCHH 469
+H+ ++ ++H+ D H + D + D +H+ D + D +H
Sbjct: 29 YHVSRDTRKVSYDFNHVSRDTHEVSCDTCRVSDDFYHVSRDTRKVSDDFYH 79
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +2
Query: 356 YHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCHH 469
++H+ D + D +H+ D H + D + D +H
Sbjct: 28 FYHVSRDTRKVSYDFNHVSRDTHEVSCDTCRVSDDFYH 65
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/50 (18%), Positives = 22/50 (44%)
Frame = +2
Query: 317 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCH 466
+H+ H++ + D++H+ D + D +H+ D + D +
Sbjct: 43 NHVSRDTHEVSCDTCRVSDDFYHVSRDTRKVSDDFYHVSRDTCEVSDDTY 92
>03_05_0220 +
22063411-22063468,22063535-22063545,22064478-22064609,
22064696-22065799,22065874-22066566,22066968-22067019,
22067861-22067916,22067917-22068063
Length = 750
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/50 (18%), Positives = 24/50 (48%)
Frame = +2
Query: 317 HHIRLGCHQIRLGYHHIRPDYHHIRLDCHHIRLDCHHIRLDYHHIRPDCH 466
+H+ ++ + + D++H+ D I D + + D++H+ D +
Sbjct: 687 YHVSGDTREVSCDTYQVSDDFYHVSGDTREISCDTYQVLDDFYHVSGDTY 736
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 338 HQIRLGYHHIRPD-YHHIRLDCHHIRLDCHHIRLDYHHIRP 457
H +R G +H+ PD YH I + H IR + + LD +H+ P
Sbjct: 90 HPMR-GRNHLIPDRYHMIPYEYHQIR-SMNRLILDRYHLIP 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,359,662
Number of Sequences: 37544
Number of extensions: 126648
Number of successful extensions: 289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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