Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S...    27   5.8  
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa...    27   5.8  

>At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|O23627 Glycyl-tRNA
           synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
           {Arabidopsis thaliana}; contains Pfam profile PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T);
           contains non-consensus TA acceptor splice site at intron
           4
          Length = 463

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 323 IRLGCHQIRLGY-HHIRPDYHHIRLDCHHIRLDCHH 427
           IRLG  + RL + HH+  +  H   DC    ++C +
Sbjct: 359 IRLGIDKERLRFRHHLANEMAHYATDCWDAEIECSY 394


>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
           SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1184

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 213 SLFPQFNNTVSFYFQLISMFAVTSLV-YSSLRETAATISALVAT 341
           SLF QF    +FYF ++ + + T L  Y+++         ++AT
Sbjct: 78  SLFEQFRRVANFYFLVVGILSFTPLAPYTAVSAIVPLTFVILAT 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,125,666
Number of Sequences: 28952
Number of extensions: 114816
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)