Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    28   4.0  
06_02_0087 - 11580046-11580261,11580495-11580620,11581530-115818...    28   4.0  
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289...    28   5.2  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   5.2  
01_06_0325 - 28488446-28489369                                         28   5.2  

>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 226 YENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPD 95
           Y   V FF YN+ F+  + + T+V  +G+  ++G  G +  L D
Sbjct: 764 YSGSVGFFSYNKTFDLNIVIRTVVLHNGE-ASIGAGGAIVALSD 806


>06_02_0087 -
           11580046-11580261,11580495-11580620,11581530-11581875,
           11582433-11582572,11583273-11583677
          Length = 410

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 391 LVENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTREQWFFQ 236
           LV+   V   +    YN  L +S   C CN +D V+    S D     WF+Q
Sbjct: 135 LVQGMEVGITMQIKNYNGSLSLSVLQCGCNVKDLVI----SLDG-GASWFYQ 181


>11_01_0382 -
           2892887-2893161,2893593-2893717,2893801-2894013,
           2894101-2895363,2895669-2895712
          Length = 639

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 428 TSILNSSVGSSLPCGEQQSVLQDPQH*VQPVLEDEYDD 315
           +S+  +S+G+S+PC E   VL   Q      L+ +Y D
Sbjct: 229 SSLERNSIGTSIPCSENMDVLHKMQLLKPSPLDKKYVD 266


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 292 RVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNRQFNDALELG 164
           +  Y G++A   R  + W      Y  DVL F YN++++D   +G
Sbjct: 42  KTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


>01_06_0325 - 28488446-28489369
          Length = 307

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 461 RMRELPTAMV*TSILNSSVGSSLPCGEQQSVLQ 363
           R R++    V  SILNSS  S+LP GE   VL+
Sbjct: 205 RCRQVIVVPVNGSILNSSSQSALPSGEYGQVLK 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,453,846
Number of Sequences: 37544
Number of extensions: 224682
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)