BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308A09f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3) 27 7.1 SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7) 27 9.4 SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33) 27 9.4 >SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1485 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 333 KYWLYLVLWILKYTLLFSTR**TSN*RVQYACLHHRRRQFSHSR 464 K W+ + + LKY L F + N RV A +H++ + S R Sbjct: 230 KAWVLIESFALKYNLEFKNKSFLENYRVNQAAPNHKKYRLSRVR 273 >SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3) Length = 445 Score = 27.5 bits (58), Expect = 7.1 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -2 Query: 157 VNASGDRKAVGHDGEVAGLPDIYSWF-ITPF*TTKDTV 47 V GD + HDG+ A L ++++ +TP+ + DT+ Sbjct: 404 VKCEGDEPVIMHDGKEATLREVFAMLNLTPYDLSVDTL 441 >SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7) Length = 354 Score = 27.1 bits (57), Expect = 9.4 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 388 QGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 513 Q NE+ +FS + T+ R IGC T Q + VV+ N Sbjct: 274 QHNEMEISKFSTVTATVLGVQKASRSIGC-TSCQRQTVVTPN 314 >SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33) Length = 479 Score = 27.1 bits (57), Expect = 9.4 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Frame = -2 Query: 499 QPRSEARFHNQSLE*ENCLRRWCRQAY*TRQLEVHYLVEN--NRVYFKIHNTKYNQYLKM 326 Q R+ A HN NC + + + T ++ V+ RV HN +YL+ Sbjct: 6 QTRAPATQHN------NCKQEQLKHSTTTANKSIYNTVQQLQTRVSTTQHNNCKQEYLQH 59 Query: 325 STTTCNCNSRDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNRQFNDALELGTIVN 152 STTT N + +Y N+A + + +Y N ++ + +N A +L T V+ Sbjct: 60 STTTAN-----KSIY--NTAQQLQTR--VSTTQYNNCKQEYLQHNIYNTAQQLRTTVD 108 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,472,837 Number of Sequences: 59808 Number of extensions: 266622 Number of successful extensions: 814 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 768 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 814 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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