Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    27   7.1  
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)               27   9.4  
SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)             27   9.4  

>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 333 KYWLYLVLWILKYTLLFSTR**TSN*RVQYACLHHRRRQFSHSR 464
           K W+ +  + LKY L F  +    N RV  A  +H++ + S  R
Sbjct: 230 KAWVLIESFALKYNLEFKNKSFLENYRVNQAAPNHKKYRLSRVR 273


>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 157 VNASGDRKAVGHDGEVAGLPDIYSWF-ITPF*TTKDTV 47
           V   GD   + HDG+ A L ++++   +TP+  + DT+
Sbjct: 404 VKCEGDEPVIMHDGKEATLREVFAMLNLTPYDLSVDTL 441


>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
          Length = 354

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 388 QGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 513
           Q NE+   +FS +  T+       R IGC T  Q + VV+ N
Sbjct: 274 QHNEMEISKFSTVTATVLGVQKASRSIGC-TSCQRQTVVTPN 314


>SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)
          Length = 479

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = -2

Query: 499 QPRSEARFHNQSLE*ENCLRRWCRQAY*TRQLEVHYLVEN--NRVYFKIHNTKYNQYLKM 326
           Q R+ A  HN      NC +   + +  T    ++  V+    RV    HN    +YL+ 
Sbjct: 6   QTRAPATQHN------NCKQEQLKHSTTTANKSIYNTVQQLQTRVSTTQHNNCKQEYLQH 59

Query: 325 STTTCNCNSRDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNRQFNDALELGTIVN 152
           STTT N     + +Y  N+A   + +      +Y N    ++ +  +N A +L T V+
Sbjct: 60  STTTAN-----KSIY--NTAQQLQTR--VSTTQYNNCKQEYLQHNIYNTAQQLRTTVD 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,837
Number of Sequences: 59808
Number of extensions: 266622
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)