Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.42 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   3.9  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   6.8  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    25   6.8  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   9.0  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 322 YHHPAYFCHEPVIRFGLKGGAAVVTILETLELISQRG 432
           +  P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = -3

Query: 339 IGRVVVPTRAESREILPLVNDYELSCMD 256
           + ++V  T+++ R+I+ L++ Y+LSC +
Sbjct: 566 VDQLVQGTQSDMRQIINLLSTYKLSCSE 593


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 382 PHPSNRNVLLVHGRNRQGGGTYP 314
           PHP N  ++L+ G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 156 FLWVLVQGSCFYIQ 197
           FLW+L +G  FYIQ
Sbjct: 107 FLWILTRGFRFYIQ 120


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 245 PLPPSIQESS-*SFTSGRISRDSARVGTTTLP 337
           P+PPS++ SS  +F  G  S++ A + T+ LP
Sbjct: 158 PIPPSVEASSGQNFNQGIASQNPA-ISTSNLP 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,503
Number of Sequences: 5004
Number of extensions: 45477
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)