Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672     29   3.0  
07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754           29   3.0  
03_05_1009 + 29651716-29652174                                         28   4.0  
01_06_1749 - 39636951-39638102                                         28   4.0  
05_03_0527 - 15025031-15025993                                         28   5.2  
05_03_0524 + 14994170-14995132                                         28   5.2  
02_03_0375 + 18287281-18288168                                         27   6.9  
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209...    27   9.1  

>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
          Length = 629

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 333 RVVVPTRAESREILPLVNDYELSCMDGGSGPA 238
           RV VP  A  R  + LV   ++SC  GG  PA
Sbjct: 105 RVAVPATAARRAPVDLVTLLDISCGGGGGAPA 136


>07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754
          Length = 316

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = -1

Query: 419 ISSKVSSIVTTAAPPFKPKRI-TGSWQK*AGWWYLPVRSHERSYH**MTMNFLVW---MG 252
           ISS    + TTAA PF P  I   +W     WW L  R      H    M  +VW    G
Sbjct: 72  ISSVPRFVPTTAASPFSPPAIDPPNW-----WWALDCRHGRVLSHLFNPMELMVWDPITG 126

Query: 251 EADRHP 234
           +  R P
Sbjct: 127 DQHRFP 132


>03_05_1009 + 29651716-29652174
          Length = 152

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 206 RELVITPHQAGAGPLPPSIQESS*SFTSGRISRD 307
           REL+    +AG  P PP +   S S   GRI  D
Sbjct: 80  RELIRLASRAGGPPRPPGVGPRSQSVAIGRIDED 113


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 404 SSIVTTAAPPFKPKRIT 354
           SS+ + AAPPF P RIT
Sbjct: 164 SSVASAAAPPFDPSRIT 180


>05_03_0527 - 15025031-15025993
          Length = 320

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 410 KVSSIVTTAAPPFKPKRITGSWQK*AGWW 324
           + S+ ++ ++PPFKP R+   W    G W
Sbjct: 124 RCSTPLSPSSPPFKPSRVIVRWWAPPGGW 152


>05_03_0524 + 14994170-14995132
          Length = 320

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 410 KVSSIVTTAAPPFKPKRITGSWQK*AGWW 324
           + S+ ++ ++PPFKP R+   W    G W
Sbjct: 124 RCSTPLSPSSPPFKPSRVIVRWWAPPGGW 152


>02_03_0375 + 18287281-18288168
          Length = 295

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 176 R*LFLYSVVPRELVITPHQAGAGPLPPSIQESS 274
           R +F+ +   +ELV+ P  +G+GP P S + ++
Sbjct: 46  RAMFVCNPATQELVVLPPGSGSGPCPQSTESTA 78


>10_08_1059 +
           22618999-22619206,22620386-22620416,22620440-22620974,
           22621065-22621319
          Length = 342

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
 Frame = +1

Query: 205 TGASHYS----TSGGCRSASPIH 261
           TG +HYS    +  GCR ASP+H
Sbjct: 22  TGPTHYSHPPGSCSGCRPASPLH 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,188
Number of Sequences: 37544
Number of extensions: 340442
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)