Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 391 QRLPHPSNRNVLL-VHGRNRQGGGTYPCGVTR 299
           ++LP    ++ LL ++G NR+  G Y C V R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 146 IIKIFMGASSR*LFLYSVVPRELVITPHQAGAGPLPPSIQESS 274
           I  +  GA+S  L + +  P  L  T   A A P PPS+   S
Sbjct: 20  IASVVAGAASLTL-VKAETPEHLAGTSTTAAATPTPPSVPVGS 61


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 391 QRLPHPSNRNVLL-VHGRNRQGGGTYPCGVTR 299
           ++LP    ++ LL ++G NR+  G Y C V R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = -3

Query: 360 YYWFMAEIGRVVVPTRAESREILPLVNDYELSCMDGGSGP 241
           Y+  M+ I    V T       L   NDY     +G  GP
Sbjct: 256 YFHAMSSIAEFSVSTEVLQDHTLEKSNDYYAFHFEGEKGP 295


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 216 TSSRGTTEYKNSYLELAPIK 157
           T++  T +YK+ Y+ + P+K
Sbjct: 137 TNNNNTNKYKDYYIWVDPVK 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,603
Number of Sequences: 438
Number of extensions: 3441
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)