Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   5.2  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   9.0  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  

>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -2

Query: 496 FQHLEQISSMITAEIIQHSRLI*MAKFKNLQLSRLLSKVAI 374
           F H + + +++ +E I+H ++  +  F+ L    L   V +
Sbjct: 101 FTHYKHVDAVVASEFIEHCQVAEILAFEKLVFGNLKPNVCV 141


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 487 LEQISSMITAEIIQHSRLI*MAKFKNLQLSRLLSKVAICAFGQK 356
           LEQ+  M + E+ +        + KNL LSRL +K  + AF +K
Sbjct: 410 LEQLEKMCSLELSELD-----LRGKNLLLSRLSTKKMLLAFNKK 448


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 177 NQKNELLTLYSIGSHKTLRN 236
           NQ NE++ LY    HK + N
Sbjct: 33  NQTNEVIGLYKANEHKFMNN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,851
Number of Sequences: 5004
Number of extensions: 39049
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)