Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308A06f
(521 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped prot... 29 0.025
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 25 0.54
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 24 0.71
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 24 0.71
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 24 0.71
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 24 0.71
X72339-1|CAA51066.1| 133|Tribolium castaneum abdominal protein. 23 1.6
AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A prot... 23 1.6
AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII pr... 23 1.6
DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase rever... 21 6.6
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 21 8.7
>DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped
protein.
Length = 126
Score = 29.1 bits (62), Expect = 0.025
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 188 PPR--LNPMIVAGQIDTYSQHISQFCSQSLAKLY 93
PPR L P +VAG++ Q I ++C++ K Y
Sbjct: 60 PPRTPLQPKLVAGKLKPKRQFICKYCNRQFTKSY 93
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 24.6 bits (51), Expect = 0.54
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 369 NTFHETAKLSFENRCSTQIQKLGSFLFRYHLGELR 473
+TF T KL + + +I ++ + LFR+ LG LR
Sbjct: 290 DTFRNTKKLQWLDTSHNRISEIPNDLFRF-LGNLR 323
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.71
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 454 YLKRKDPSFWIWVLHLFSKDNFAVS 380
YL+ DP ++ + H+F D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.71
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 454 YLKRKDPSFWIWVLHLFSKDNFAVS 380
YL+ DP ++ + H+F D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.71
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 454 YLKRKDPSFWIWVLHLFSKDNFAVS 380
YL+ DP ++ + H+F D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.71
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 454 YLKRKDPSFWIWVLHLFSKDNFAVS 380
YL+ DP ++ + H+F D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624
>X72339-1|CAA51066.1| 133|Tribolium castaneum abdominal protein.
Length = 133
Score = 23.0 bits (47), Expect = 1.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 395 QLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHR 291
+L+ + V E+N++A + Q+ +QQQ+K +
Sbjct: 60 KLKKELRAVKEINEQARREREEQERHKQQQQEKQQ 94
>AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A
protein.
Length = 284
Score = 23.0 bits (47), Expect = 1.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 395 QLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHR 291
+L+ + V E+N++A + Q+ +QQQ+K +
Sbjct: 211 KLKKELRAVKEINEQARREREEQERHKQQQQEKQQ 245
>AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII
protein.
Length = 343
Score = 23.0 bits (47), Expect = 1.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 395 QLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHR 291
+L+ + V E+N++A + Q+ +QQQ+K +
Sbjct: 270 KLKKELRAVKEINEQARREREEQERHKQQQQEKQQ 304
>DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase reverse
transcriptase protein.
Length = 596
Score = 21.0 bits (42), Expect = 6.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 219 VFFWQWGLIFSSPSSIFLCPLH 284
++ W GL+ P S LC L+
Sbjct: 299 IYKWNHGLLQGDPLSGCLCELY 320
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 20.6 bits (41), Expect = 8.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 201 TSSSPAKVESYDRSRTNRHIQPTYKPVL 118
++S PAK+ S+D + T + + P L
Sbjct: 1302 SASVPAKIASFDDTFTTTYKEDVTLPCL 1329
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,693
Number of Sequences: 336
Number of extensions: 2357
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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