BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308A06f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 58 8e-10 SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 28 0.73 SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 28 0.97 SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 27 1.7 SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 27 1.7 SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 26 3.9 SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 26 3.9 SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 6.8 SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 25 9.0 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.0 SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 25 9.0 SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.0 >SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharomyces pombe|chr 1|||Manual Length = 357 Score = 58.0 bits (134), Expect = 8e-10 Identities = 33/96 (34%), Positives = 53/96 (55%) Frame = -1 Query: 383 LMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLF 204 L+E DE + E +Q+ + R+Q +W+ KR ENA RAA++ PLP +D ++F Sbjct: 254 LLESTDEFHYEQGNLGFHQRQLAREQAKIQQWIAKRKAENANRAAENLQPLPLDDWKRIF 313 Query: 203 KPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKL 96 K P L+ ++++ QI S I + S L+KL Sbjct: 314 KLPAEPRLLDSLLISSQI-MKSTQIDEQSSAFLSKL 348 >SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 28.3 bits (60), Expect = 0.73 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 236 PLPEEDVNKLFKPHPVPPRLNPMIVAGQIDTY 141 PL +E+ +L+ P PV + P G ID Y Sbjct: 503 PLYDEEATQLYTPKPVVANIVPKNAYGNIDLY 534 >SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 677 Score = 27.9 bits (59), Expect = 0.97 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = +3 Query: 339 ELDRFLIQFINTFHETAKLSFENRCSTQIQK--LGSFLFRYHL-GELRDHYVS*W-RVPD 506 E++R L+ F+ F T K ++ C T + L F + + L L+D W RV + Sbjct: 285 EIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRWCRVKE 344 Query: 507 NNWH 518 +W+ Sbjct: 345 YSWN 348 >SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosaccharomyces pombe|chr 3|||Manual Length = 298 Score = 27.1 bits (57), Expect = 1.7 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 254 AAKDETPLPEEDVNKLFKPHPVPPRLNPMIVA 159 AA P PEED+ K+F H + + P+I + Sbjct: 220 AAGITAPKPEEDLEKVFSSHGLTDKSVPIITS 251 >SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 27.1 bits (57), Expect = 1.7 Identities = 19/96 (19%), Positives = 36/96 (37%) Frame = -1 Query: 404 LEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPE 225 LE + +S++ +LN A+ + + + ++ N ET LP Sbjct: 508 LEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDGTIIKSTTNVYLKVNSETSLPT 567 Query: 224 EDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFC 117 D+ + P +L+P I + S+FC Sbjct: 568 GDIVEWQNDITKPTKLDPNISFDNCFIVDREASKFC 603 >SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schizosaccharomyces pombe|chr 2|||Manual Length = 192 Score = 25.8 bits (54), Expect = 3.9 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 305 QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 177 ++KH W V RAA++ L E+D +LF+ + + RL Sbjct: 37 RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80 >SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schizosaccharomyces pombe|chr 1|||Manual Length = 191 Score = 25.8 bits (54), Expect = 3.9 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 305 QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 177 ++KH W V RAA++ L E+D +LF+ + + RL Sbjct: 37 RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80 >SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 25.0 bits (52), Expect = 6.8 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -1 Query: 302 DKHRWMVKRAQENAARAAKDETPLPEED 219 D+HR K+ QE ++ KDE L E + Sbjct: 157 DRHRSSFKKLQEKKDKSLKDEKKLYEAE 184 >SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schizosaccharomyces pombe|chr 1|||Manual Length = 320 Score = 24.6 bits (51), Expect = 9.0 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +3 Query: 348 RFLIQFINTFHETAKLSFENRCSTQIQKLGSFLFRYHLGELRDH 479 R +++IN E +F +C QIQK + Y + +L+ H Sbjct: 201 RTSVEYINPSQEAQSKNFTFKCHRQIQK--DYDIVYPVNDLKFH 242 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 24.6 bits (51), Expect = 9.0 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +3 Query: 198 RFKEFVHVFFWQWGLIFSSPSSIFLCPLHHPTM 296 RFK + FF +W + P +L PL P + Sbjct: 468 RFKVDIPTFFERWPFLKDLPLKGYLFPLCEPNL 500 >SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofactor Cox15, fusion|Schizosaccharomyces pombe|chr 1|||Manual Length = 631 Score = 24.6 bits (51), Expect = 9.0 Identities = 7/14 (50%), Positives = 10/14 (71%) Frame = +3 Query: 195 MRFKEFVHVFFWQW 236 M EF ++FFW+W Sbjct: 166 MTVDEFKNIFFWEW 179 >SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc7|Schizosaccharomyces pombe|chr 2|||Manual Length = 1062 Score = 24.6 bits (51), Expect = 9.0 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Frame = -1 Query: 434 KFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRY---QQLVVRQQQDKHRWMVKRAQEN 264 K GT ++ + +M+ + E + +++ + + +V Q +VK ++ Sbjct: 966 KLTHKGTKPIVVLNIFQIMKSMCEASSQSVAYIAHCGLPDVVANLNQTSDSVLVKELAKD 1025 Query: 263 AARAAKDETPLPEEDVNKLFKPHPVPPRLNP 171 + K E + + KPH PPR P Sbjct: 1026 LLKYLKVPQGPINEHKSPISKPHMPPPRWQP 1056 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,107,625 Number of Sequences: 5004 Number of extensions: 41860 Number of successful extensions: 178 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 178 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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