Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    58   8e-10
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    28   0.73 
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    28   0.97 
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   1.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   1.7  
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    26   3.9  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   3.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   6.8  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    25   9.0  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.0  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   9.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.0  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 58.0 bits (134), Expect = 8e-10
 Identities = 33/96 (34%), Positives = 53/96 (55%)
 Frame = -1

Query: 383 LMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLF 204
           L+E  DE + E      +Q+ + R+Q    +W+ KR  ENA RAA++  PLP +D  ++F
Sbjct: 254 LLESTDEFHYEQGNLGFHQRQLAREQAKIQQWIAKRKAENANRAAENLQPLPLDDWKRIF 313

Query: 203 KPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKL 96
           K    P  L+ ++++ QI   S  I +  S  L+KL
Sbjct: 314 KLPAEPRLLDSLLISSQI-MKSTQIDEQSSAFLSKL 348


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 236 PLPEEDVNKLFKPHPVPPRLNPMIVAGQIDTY 141
           PL +E+  +L+ P PV   + P    G ID Y
Sbjct: 503 PLYDEEATQLYTPKPVVANIVPKNAYGNIDLY 534


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 339 ELDRFLIQFINTFHETAKLSFENRCSTQIQK--LGSFLFRYHL-GELRDHYVS*W-RVPD 506
           E++R L+ F+  F  T K   ++ C T  +   L  F + + L   L+D     W RV +
Sbjct: 285 EIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRWCRVKE 344

Query: 507 NNWH 518
            +W+
Sbjct: 345 YSWN 348


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 254 AAKDETPLPEEDVNKLFKPHPVPPRLNPMIVA 159
           AA    P PEED+ K+F  H +  +  P+I +
Sbjct: 220 AAGITAPKPEEDLEKVFSSHGLTDKSVPIITS 251


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/96 (19%), Positives = 36/96 (37%)
 Frame = -1

Query: 404 LEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPE 225
           LE + +S++    +LN  A+    +    +          + ++  N       ET LP 
Sbjct: 508 LEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDGTIIKSTTNVYLKVNSETSLPT 567

Query: 224 EDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFC 117
            D+ +       P +L+P I         +  S+FC
Sbjct: 568 GDIVEWQNDITKPTKLDPNISFDNCFIVDREASKFC 603


>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 305 QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 177
           ++KH  W V        RAA++   L E+D  +LF+ + +  RL
Sbjct: 37  RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 305 QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 177
           ++KH  W V        RAA++   L E+D  +LF+ + +  RL
Sbjct: 37  RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 302 DKHRWMVKRAQENAARAAKDETPLPEED 219
           D+HR   K+ QE   ++ KDE  L E +
Sbjct: 157 DRHRSSFKKLQEKKDKSLKDEKKLYEAE 184


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 348 RFLIQFINTFHETAKLSFENRCSTQIQKLGSFLFRYHLGELRDH 479
           R  +++IN   E    +F  +C  QIQK   +   Y + +L+ H
Sbjct: 201 RTSVEYINPSQEAQSKNFTFKCHRQIQK--DYDIVYPVNDLKFH 242


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 198 RFKEFVHVFFWQWGLIFSSPSSIFLCPLHHPTM 296
           RFK  +  FF +W  +   P   +L PL  P +
Sbjct: 468 RFKVDIPTFFERWPFLKDLPLKGYLFPLCEPNL 500


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 195 MRFKEFVHVFFWQW 236
           M   EF ++FFW+W
Sbjct: 166 MTVDEFKNIFFWEW 179


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
            Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = -1

Query: 434  KFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRY---QQLVVRQQQDKHRWMVKRAQEN 264
            K    GT  ++   +  +M+ + E + +++ +  +     +V    Q     +VK   ++
Sbjct: 966  KLTHKGTKPIVVLNIFQIMKSMCEASSQSVAYIAHCGLPDVVANLNQTSDSVLVKELAKD 1025

Query: 263  AARAAKDETPLPEEDVNKLFKPHPVPPRLNP 171
              +  K       E  + + KPH  PPR  P
Sbjct: 1026 LLKYLKVPQGPINEHKSPISKPHMPPPRWQP 1056


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,625
Number of Sequences: 5004
Number of extensions: 41860
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)