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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...   111   3e-25
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    31   0.56 
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    29   3.0  
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702...    28   5.2  
05_01_0009 - 64754-65073,65202-65469                                   28   5.2  
12_02_0143 - 14354323-14354463,14354733-14354837,14355515-143558...    27   6.9  
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968...    27   6.9  
04_03_0661 - 18468244-18469580,18469610-18469619                       27   6.9  
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425...    27   6.9  
09_06_0232 - 21737299-21739233                                         27   9.1  
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552     27   9.1  

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score =  111 bits (267), Expect = 3e-25
 Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
 Frame = -1

Query: 521 EVPIVIRNSPLTNIMISELTEMIPEEEGS-KFLDLGTASVLEGQLRSLMERVDELNQEAI 345
           E+PI + NS L +  ++EL    P  +     L L TA  +E  L  L+  +D+L+ E  
Sbjct: 195 EIPIKVSNSALVSAFMTELEPESPVSQCDFDRLKLSTAPFMERNLEFLIGCMDDLSSEQN 254

Query: 344 KFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEED-VNKLFKPHPVPPRLNPM 168
           KF  Y + V RQQ  +  W+ KR QEN AR A  E PLPEED  N +FKP P P RL   
Sbjct: 255 KFQYYYRNVSRQQSQQQAWLQKRRQENMARKAAGEEPLPEEDPSNPIFKPIPEPSRLEGY 314

Query: 167 IVAGQIDTYSQHISQFCSQSLAKLYLTQALQ 75
           +V  QI +Y  HI+    Q+  +LYL +ALQ
Sbjct: 315 LVTNQISSYCNHINGVAGQNFNRLYLMKALQ 345


>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
            17823948-17824061,17824145-17824297,17826928-17827071,
            17827162-17827516,17828574-17828741,17829522-17829751,
            17829916-17830049,17830686-17830749
          Length = 1163

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
 Frame = -1

Query: 389  RSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNK 210
            ++ M++V +LNQ+ +    +QQ V +QQQ + +   ++ Q    + A      P++  ++
Sbjct: 956  QNFMQQVQQLNQQMV---LWQQQVQQQQQQQQQQQQQQQQLQLQQHALPVQQQPDQKYSQ 1012

Query: 209  LFKPHPVPPRLN-PMIVAGQIDTYSQHI--SQFCSQSLAKLYLTQALQNAKEAKQ 54
            L          N P  +  Q+D  S+ +   Q   Q   ++YL Q  Q  ++ +Q
Sbjct: 1013 LPSSGDTRHEQNKPQKLESQMDHQSELVQQQQVYFQQQQQMYLMQQQQMYQQQQQ 1067


>03_03_0246 +
           15789635-15794227,15794314-15794555,15794630-15794771,
           15796089-15796272,15796349-15796696,15796753-15797450,
           15798208-15798900
          Length = 2299

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 407 VLEGQLRS--LMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETP 234
           VLE Q R+  ++ + +E  +  I+    +Q +V ++     W+ ++ +  AA+ A+++  
Sbjct: 487 VLEEQARAREIVRKQEEERERLIREEEERQRLVEEEARHAAWLAEQERLEAAKRAEEQRI 546

Query: 233 LPEEDVNK 210
             EE+  K
Sbjct: 547 AREEEKRK 554


>05_07_0262 +
           28769335-28769391,28769732-28769855,28770175-28770266,
           28770673-28771078,28772057-28772184,28772273-28772332,
           28772814-28772963,28772999-28773061,28773062-28773217,
           28773361-28773572,28773698-28773796,28774343-28774512,
           28774592-28775040
          Length = 721

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 230 PEEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLA 102
           P++ +++ +  H VP R+N +  +  +D Y  H SQ  +Q+ A
Sbjct: 607 PQQQISQAYGYHQVPARMNCVEQSQAMDAYKMH-SQSQTQAYA 648


>05_01_0009 - 64754-65073,65202-65469
          Length = 195

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 479 MISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRY 330
           MIS L    P    +   D G    L G++R L+ +VD++       NR+
Sbjct: 146 MISSLLGRSPTATATASHDHGAKLALAGEMRGLLAKVDKMLSATTPANRH 195


>12_02_0143 -
           14354323-14354463,14354733-14354837,14355515-14355815,
           14356065-14356261,14356412-14356940,14357842-14358848
          Length = 759

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 437 SKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLV 318
           SKF  +G  + L+G++ S  +  DE   EA  + R+Q+ V
Sbjct: 160 SKFFPMGKTNALQGRISSFQQTRDESFPEA--WERFQEYV 197


>07_03_0196 +
           14995224-14995489,14995859-14995877,14996703-14996839,
           14998365-14998457,15001597-15001932,15003035-15003503
          Length = 439

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 186 RDWMRFKEFVHVFFWQWGLIFSSPSSIFLC 275
           + W R KE   +F W+W  + S+P S   C
Sbjct: 128 QQWQRNKE---IFLWRWPTLGSNPGSATAC 154


>04_03_0661 - 18468244-18469580,18469610-18469619
          Length = 448

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 347 IKFNRYQQLVVRQQQDKHRWMVKRAQEN-AARAAKDETPLPEEDVNK 210
           I+  + ++   +Q++ + +++ K+ QE  AARAA++E    EE+  +
Sbjct: 82  IQRRKEEEKAEKQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAKR 128


>01_01_0573 +
           4253484-4254653,4255526-4255735,4255842-4255937,
           4256034-4256255,4256829-4257023,4257097-4257243,
           4257323-4257472,4257762-4257892,4257978-4258194
          Length = 845

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/102 (16%), Positives = 46/102 (45%)
 Frame = -1

Query: 404 LEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPE 225
           +E + +  M+R   ++Q A   N ++   + +        ++  Q+   + ++ E  L E
Sbjct: 685 IEARYKEWMDRGPSIDQLAYCINSFRDAALSKDPKFDHIEMEEKQKVINQCSEAEVWLRE 744

Query: 224 EDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAK 99
               K+ +   +P   NP++++  +   ++ + +FC   + K
Sbjct: 745 ----KIQQQDALPKHANPVLLSSDLKKKAETVDRFCKPIMMK 782


>09_06_0232 - 21737299-21739233
          Length = 644

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 388 AVSWNVLMN*IKKRSSSIGTNSWWSGSNKTSIVGW 284
           AVSW  ++  + KR+S      W+    + SI+ W
Sbjct: 277 AVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311


>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
          Length = 471

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 240 DPIAXXXREQTL*TSSSPAKVESYDRSR 157
           +PIA    E  + TSSSP  VES D +R
Sbjct: 294 EPIADPQDENAVATSSSPHVVESSDANR 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,990
Number of Sequences: 37544
Number of extensions: 277697
Number of successful extensions: 798
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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