Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308A06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 111 3e-25
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 31 0.56
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 3.0
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 28 5.2
05_01_0009 - 64754-65073,65202-65469 28 5.2
12_02_0143 - 14354323-14354463,14354733-14354837,14355515-143558... 27 6.9
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 27 6.9
04_03_0661 - 18468244-18469580,18469610-18469619 27 6.9
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 27 6.9
09_06_0232 - 21737299-21739233 27 9.1
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 27 9.1
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 111 bits (267), Expect = 3e-25
Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Frame = -1
Query: 521 EVPIVIRNSPLTNIMISELTEMIPEEEGS-KFLDLGTASVLEGQLRSLMERVDELNQEAI 345
E+PI + NS L + ++EL P + L L TA +E L L+ +D+L+ E
Sbjct: 195 EIPIKVSNSALVSAFMTELEPESPVSQCDFDRLKLSTAPFMERNLEFLIGCMDDLSSEQN 254
Query: 344 KFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEED-VNKLFKPHPVPPRLNPM 168
KF Y + V RQQ + W+ KR QEN AR A E PLPEED N +FKP P P RL
Sbjct: 255 KFQYYYRNVSRQQSQQQAWLQKRRQENMARKAAGEEPLPEEDPSNPIFKPIPEPSRLEGY 314
Query: 167 IVAGQIDTYSQHISQFCSQSLAKLYLTQALQ 75
+V QI +Y HI+ Q+ +LYL +ALQ
Sbjct: 315 LVTNQISSYCNHINGVAGQNFNRLYLMKALQ 345
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 31.1 bits (67), Expect = 0.56
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = -1
Query: 389 RSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNK 210
++ M++V +LNQ+ + +QQ V +QQQ + + ++ Q + A P++ ++
Sbjct: 956 QNFMQQVQQLNQQMV---LWQQQVQQQQQQQQQQQQQQQQLQLQQHALPVQQQPDQKYSQ 1012
Query: 209 LFKPHPVPPRLN-PMIVAGQIDTYSQHI--SQFCSQSLAKLYLTQALQNAKEAKQ 54
L N P + Q+D S+ + Q Q ++YL Q Q ++ +Q
Sbjct: 1013 LPSSGDTRHEQNKPQKLESQMDHQSELVQQQQVYFQQQQQMYLMQQQQMYQQQQQ 1067
>03_03_0246 +
15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 407 VLEGQLRS--LMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETP 234
VLE Q R+ ++ + +E + I+ +Q +V ++ W+ ++ + AA+ A+++
Sbjct: 487 VLEEQARAREIVRKQEEERERLIREEEERQRLVEEEARHAAWLAEQERLEAAKRAEEQRI 546
Query: 233 LPEEDVNK 210
EE+ K
Sbjct: 547 AREEEKRK 554
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 230 PEEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLA 102
P++ +++ + H VP R+N + + +D Y H SQ +Q+ A
Sbjct: 607 PQQQISQAYGYHQVPARMNCVEQSQAMDAYKMH-SQSQTQAYA 648
>05_01_0009 - 64754-65073,65202-65469
Length = 195
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 479 MISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRY 330
MIS L P + D G L G++R L+ +VD++ NR+
Sbjct: 146 MISSLLGRSPTATATASHDHGAKLALAGEMRGLLAKVDKMLSATTPANRH 195
>12_02_0143 -
14354323-14354463,14354733-14354837,14355515-14355815,
14356065-14356261,14356412-14356940,14357842-14358848
Length = 759
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 437 SKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLV 318
SKF +G + L+G++ S + DE EA + R+Q+ V
Sbjct: 160 SKFFPMGKTNALQGRISSFQQTRDESFPEA--WERFQEYV 197
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 186 RDWMRFKEFVHVFFWQWGLIFSSPSSIFLC 275
+ W R KE +F W+W + S+P S C
Sbjct: 128 QQWQRNKE---IFLWRWPTLGSNPGSATAC 154
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -1
Query: 347 IKFNRYQQLVVRQQQDKHRWMVKRAQEN-AARAAKDETPLPEEDVNK 210
I+ + ++ +Q++ + +++ K+ QE AARAA++E EE+ +
Sbjct: 82 IQRRKEEEKAEKQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAKR 128
>01_01_0573 +
4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/102 (16%), Positives = 46/102 (45%)
Frame = -1
Query: 404 LEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPE 225
+E + + M+R ++Q A N ++ + + ++ Q+ + ++ E L E
Sbjct: 685 IEARYKEWMDRGPSIDQLAYCINSFRDAALSKDPKFDHIEMEEKQKVINQCSEAEVWLRE 744
Query: 224 EDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAK 99
K+ + +P NP++++ + ++ + +FC + K
Sbjct: 745 ----KIQQQDALPKHANPVLLSSDLKKKAETVDRFCKPIMMK 782
>09_06_0232 - 21737299-21739233
Length = 644
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 388 AVSWNVLMN*IKKRSSSIGTNSWWSGSNKTSIVGW 284
AVSW ++ + KR+S W+ + SI+ W
Sbjct: 277 AVSWTSMLCALAKRASIDAARDWFEQIPEKSIISW 311
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 240 DPIAXXXREQTL*TSSSPAKVESYDRSR 157
+PIA E + TSSSP VES D +R
Sbjct: 294 EPIADPQDENAVATSSSPHVVESSDANR 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,990
Number of Sequences: 37544
Number of extensions: 277697
Number of successful extensions: 798
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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