BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308A06f (521 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 28 0.17 AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein. 23 6.2 AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein p... 23 6.2 M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. 23 8.2 AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 23 8.2 >AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. Length = 1376 Score = 28.3 bits (60), Expect = 0.17 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Frame = -1 Query: 476 ISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFN---RYQQLVVRQQ 306 + TE I E SK VL+ ++ L +++D+L+ K + + V++ Sbjct: 880 VDRYTEQINEITNSK------VKVLQTKINGLGKQIDKLSANISKLTVEIKTSERNVQKS 933 Query: 305 QDKHRWMVKR--AQENAARAAKDETPLPEEDVNKL 207 +DK M A ++A R DE EE+ NKL Sbjct: 934 KDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKL 968 Score = 23.0 bits (47), Expect = 6.2 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -1 Query: 392 LRSLMERVDELNQEAIKFNRYQQLVVRQQQD 300 L + ERVD LN+E + + +L R+ +D Sbjct: 255 LLKINERVDALNEERTEKHNRCKLAEREMKD 285 >AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein. Length = 2259 Score = 23.0 bits (47), Expect = 6.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 284 VKRAQENAARAAKDETPLPEED 219 V+ QEN R ++E LP+ED Sbjct: 2089 VRIQQENGHRITEEEYYLPDED 2110 >AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein protein. Length = 724 Score = 23.0 bits (47), Expect = 6.2 Identities = 14/85 (16%), Positives = 36/85 (42%) Frame = -1 Query: 509 VIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRY 330 V+R P + + +++G +++ + Q R ++ + Q+ + RY Sbjct: 238 VVRGRPSQRHRQPQQQQQQQQQQGERYVPPQLRQQRQQQQRPRQQQQQQQQQQQQQGERY 297 Query: 329 QQLVVRQQQDKHRWMVKRAQENAAR 255 +RQQ+ + + ++ Q+ R Sbjct: 298 VPPQLRQQRQQQQHQQQQQQQQQQR 322 >M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. Length = 613 Score = 22.6 bits (46), Expect = 8.2 Identities = 19/95 (20%), Positives = 42/95 (44%) Frame = -1 Query: 425 DLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAK 246 +L T V Q ++ ++ Q+ + RYQ +RQQ + + + + A +++ Sbjct: 308 ELWTTVVRRRQNTQQQQQSNQPQQQQQQTGRYQPPQMRQQLQQQQQQRQPQRYVVAGSSQ 367 Query: 245 DETPLPEEDVNKLFKPHPVPPRLNPMIVAGQIDTY 141 + ++ K +P P ++P GQ +T+ Sbjct: 368 QQQQQHQQQQQKRKRPKPELIEISP----GQNETF 398 >AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase protein. Length = 1168 Score = 22.6 bits (46), Expect = 8.2 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -1 Query: 338 NRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPP 183 NR Q +QQ+ + + ARAA +E P +V + PVPP Sbjct: 1057 NRSAQRRRQQQRQQRLGDFELVPAVLARAAANEAAEPTGEVEEEEVSPPVPP 1108 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 512,038 Number of Sequences: 2352 Number of extensions: 10538 Number of successful extensions: 62 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 62 length of database: 563,979 effective HSP length: 60 effective length of database: 422,859 effective search space used: 47783067 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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