Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308A06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 69 2e-12
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 30 1.2
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid deplete... 28 4.7
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 27 6.2
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 27 6.2
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 27 6.2
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 27 6.2
Z74042-16|CAA98527.3| 512|Caenorhabditis elegans Hypothetical p... 27 8.1
Z74042-15|CAD54157.1| 505|Caenorhabditis elegans Hypothetical p... 27 8.1
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 27 8.1
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 69.3 bits (162), Expect = 2e-12
Identities = 41/161 (25%), Positives = 86/161 (53%), Gaps = 7/161 (4%)
Frame = -1
Query: 521 EVPIVIRNSPLTNIMISELT---EMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQE 351
E+PI+I++S L N+++SEL+ ++ ++ DLG+ LE +R++M VDELN+
Sbjct: 193 ELPIIIKSSYLNNVLMSELSLAKSCSSDKYSTRHFDLGSKKSLEKSVRAMMANVDELNKS 252
Query: 350 AIKFNRYQQLVVRQQQDKHRWMV--KRAQENAARAAKDETPLPEEDVNKLFKPHPVPPR- 180
+Y + +Q+ D + + KR QEN +R A+ + +P +D+ ++ P
Sbjct: 253 IQSLTKY--TIDKQRHDNMVFSLTQKRQQENESRVARGDPTIPMDDIKRIKAPQLQTRNG 310
Query: 179 -LNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQNAKEA 60
L+ ++ + + + S+++ K+++ +A+ K A
Sbjct: 311 LLDELLASFDTNALADFSKTVTSENITKMFIAEAVAEEKVA 351
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = -1
Query: 515 PIVIRNSPLTNIMISELTEMIP----EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEA 348
P++ R + +++ ++ IP +E S FL GT V+E + + R D A
Sbjct: 16 PVIQRKTRDSDLCLTSDIPKIPPNCIDELNSHFLGKGTFGVVE-KTKYRKTRDDTYRPAA 74
Query: 347 IKFNRYQQLVVRQQQDKHRWMVK 279
IK+ L + +++ KH W ++
Sbjct: 75 IKYASATHLSILKREAKHMWNLR 97
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 3.5
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -1
Query: 458 MIPEEEGSKFLDLGTASVLEGQLRSLMERVDELN-----QEAIKFNRYQQLVVRQQQDKH 294
M P EE F+ S+ E + ++L E+ +EL + K QQL QQ+
Sbjct: 1 MSPNEENCFFI-----SLFEAEKKALAEKCEELTLKFEQADKEKNEMVQQLSRLQQEMLE 55
Query: 293 RWMVKRAQENAARAAKDETPLPEEDVNK 210
+ +A+ N A+A ++E +DV +
Sbjct: 56 KCDALQAEVNEAKALREEIQAKYDDVTQ 83
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 3.5
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -1
Query: 458 MIPEEEGSKFLDLGTASVLEGQLRSLMERVDELN-----QEAIKFNRYQQLVVRQQQDKH 294
M P EE F+ S+ E + ++L E+ +EL + K QQL QQ+
Sbjct: 1 MSPNEENCFFI-----SLFEAEKKALAEKCEELTLKFEQADKEKNEMVQQLSRLQQEMLE 55
Query: 293 RWMVKRAQENAARAAKDETPLPEEDVNK 210
+ +A+ N A+A ++E +DV +
Sbjct: 56 KCDALQAEVNEAKALREEIQAKYDDVTQ 83
>AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid depleted
protein 6 protein.
Length = 573
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 320 VVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFKPHPV 189
+V++QQD VK +ENAAR T EE N+ K +
Sbjct: 372 IVKEQQDAEEAEVKAIRENAARKQAAATGQVEEVENQKEKDREI 415
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -1
Query: 227 EEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQNAKEAKQNN 48
EE V P P PP+ +P A +D Q+ Q Q + K + QN +++
Sbjct: 197 EEPVTLAAPPQPKPPKPSPSTTAILVDQVGQNGIQHSPQDVPKEVASITSQNENSLAEHH 256
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = -1
Query: 449 EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQ 270
++E SK L G EG+++++ E++ + E K ++ ++ V + + W+ +
Sbjct: 977 DKEASKALVKGAVDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEK 1036
Query: 269 ENAARAAKD 243
E + +K+
Sbjct: 1037 EEILKMSKE 1045
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = -1
Query: 449 EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQ 270
++E SK L G EG+++++ E++ + E K ++ ++ V + + W+ +
Sbjct: 735 DKEASKALVKGAVDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEK 794
Query: 269 ENAARAAKD 243
E + +K+
Sbjct: 795 EEILKMSKE 803
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = -1
Query: 449 EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQ 270
++E SK L G EG+++++ E++ + E K ++ ++ V + + W+ +
Sbjct: 977 DKEASKALVKGAVDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEK 1036
Query: 269 ENAARAAKD 243
E + +K+
Sbjct: 1037 EEILKMSKE 1045
>Z74042-16|CAA98527.3| 512|Caenorhabditis elegans Hypothetical
protein T11F9.2b protein.
Length = 512
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +3
Query: 21 HF*YHTKKLVV---LFRFFRVLKSLSQI-QFR 104
HF YHTK L++ L+ FF V + L I +FR
Sbjct: 114 HFEYHTKSLIILCALYAFFTVDRMLQYILEFR 145
>Z74042-15|CAD54157.1| 505|Caenorhabditis elegans Hypothetical
protein T11F9.2a protein.
Length = 505
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +3
Query: 21 HF*YHTKKLVV---LFRFFRVLKSLSQI-QFR 104
HF YHTK L++ L+ FF V + L I +FR
Sbjct: 107 HFEYHTKSLIILCALYAFFTVDRMLQYILEFR 138
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -1
Query: 314 RQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRLNPMI 165
+Q + H V RA A K P P + + +PVPP L ++
Sbjct: 1956 QQPKKMHIPPVTRATSPPPPAQKSPQPAPFHSITEPLSDYPVPPPLGSLV 2005
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,532,332
Number of Sequences: 27780
Number of extensions: 234880
Number of successful extensions: 868
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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