Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   3.9  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   6.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   9.0  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   9.0  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 423 FLIFKNLLSFNMQFTVILMETN 488
           FL+ +  +SFNM F   L++TN
Sbjct: 788 FLLQEQYISFNMDFAEFLIDTN 809



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 387 NKTVDTFYKENSFLIFKNL 443
           +K +D+F  EN  LI+KNL
Sbjct: 859 SKALDSFLSENDDLIYKNL 877


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 155 MNQPNLNTYKSRLTPY 202
           M QP+L TY+SR  P+
Sbjct: 843 MQQPSLTTYESRQNPF 858


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 184 ISFNPLFFLFKSLINKYISIQL 249
           +  NP FFLF SL    ISI L
Sbjct: 545 VYINPRFFLFDSLFEVIISIIL 566


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 196 PLFFLFKSLINKYISIQLFKHLTNFLYT 279
           PL+F+ K L NKYI+    K     L+T
Sbjct: 32  PLYFVNKELYNKYIAFT--KSFAGILFT 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,041
Number of Sequences: 5004
Number of extensions: 30246
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)