Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614...    27   6.9  
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    27   9.1  

>06_03_1119 +
           27760412-27760527,27760851-27761010,27761283-27761449,
           27761525-27761629,27762097-27762864,27762942-27763131,
           27763763-27763940,27764106-27764497
          Length = 691

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 45  FFVTFILTLSSPPDTPQCEFSFETRGSNLNCS 140
           F+  ++L  +S P+ PQ   S+ + GSNL+ S
Sbjct: 226 FYHLWLLAQTSSPENPQLIASWPSNGSNLSLS 257


>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 418 IHS*YLRIYYLLICNL 465
           IHS +LR+ YLL CNL
Sbjct: 550 IHSTFLRVKYLLSCNL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,693,869
Number of Sequences: 37544
Number of extensions: 144549
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)